RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA591127" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA591127 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17142603 17142603 PRJNA591127_P_NODE_10594_length_226_cov_2.396825_g10426_i0 PRJNA591127 10594 226 2.396825 5.4168245 Gromochytrium mamkaevae 1486924 Fungi Fungi 100 7.08e-17   NTclustered gi|612507318|gb|KF586842.1| 1486924 g10426 i0 87.5 9.80088495575221 88 9 38 2 4 89 6198 6111 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2215 100 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
18990126 18990126 PRJNA591127_P_NODE_20775_length_196_cov_1.735849_g20606_i0 PRJNA591127 20775 196 1.735849 3.40226404 Chytridium 4813 Fungi Fungi 117 5.93e-22   NTclustered gi|82398596|gb|DQ273831.1| 355335 g20606 i0 84 62.9897959183673 125 16 63 4 18 140 1615 1737 Chytridium sp. JEL341 isolate AFTOL-ID 1531 28S ribosomal RNA gene, partial sequence blastn 12346 117 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium sp. JEL341
23517484 23517484 PRJNA591127_P_NODE_28439_length_152_cov_1.408696_g28270_i0 PRJNA591127 28439 152 1.408696 2.14121792 Spizellomyces punctatus 109760 Fungi Fungi 204 3.2399999999999996e-48   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g28270 i0 93.478 62.5723684210526 138 8 90 1 16 152 4073 3936 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 9511 204 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;