RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA588137" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA588137 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
564769 564769 PRJNA588137_S_NODE_3121_length_316_cov_160.580247_g3088_i0 PRJNA588137 3121 316 160.58024700000001 507.43358052 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 1.03e-21   NTclustered gi|2165834194|emb|OV195900.1| 2697049 g3088 i0 94.805 28.8829113924051 77 1 24 3 4 78 30067 29992 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 9127 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
1840265 1840265 PRJNA588137_S_NODE_2962_length_322_cov_1.554217_g2929_i0 PRJNA588137 2962 322 1.554217 5.00457874 Betacoronavirus pandemicum 3418604 Viruses Viruses 84.2 1.07e-11   NTclustered gi|2165835422|emb|OV196488.1| 2697049 g2929 i0 94.545 19.7608695652174 55 1 17 2 269 322 118 65 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 6363 84.2 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;