RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA588137" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA588137 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3115698 3115698 PRJNA588137_S_NODE_7703_length_248_cov_0.880000_g7670_i0 PRJNA588137 7703 248 0.88 2.1824 Thermus brockianus 56956 Bacteria Bacteria 292 1.21e-74   NTclustered gi|1102957264|gb|CP016313.1| 56956 g7670 i0 87.903 18.3911290322581 248 30 100 0 1 248 78149 77902 Thermus brockianus strain GE-1 plasmid pTB1, complete sequence blastn 4561 292 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brockianus
9493151 9493151 PRJNA588137_S_NODE_10708_length_242_cov_0.911243_g10675_i0 PRJNA588137 10708 242 0.911243 2.20520806 Deinococcus geothermalis 68909 Bacteria Bacteria 302 1.96e-77   NTclustered gi|94554390|gb|CP000359.1| 319795 g10675 i0 89.787 2.81404958677686 235 24 97 0 2 236 2216592 2216358 Deinococcus geothermalis DSM 11300, complete genome blastn 681 302 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
23517170 23517170 PRJNA588137_S_NODE_8739_length_246_cov_0.890173_g8706_i0 PRJNA588137 8739 246 0.890173 2.18982558 Trueperaceae bacterium 2026798 Bacteria Bacteria 84.2 7.88e-12   NTclustered gi|2108366028|gb|CP070651.1| 2026798 g8706 i0 94.444 0.219512195121951 54 3 22 0 26 79 3885773 3885720 MAG: Trueperaceae bacterium isolate bin86 chromosome blastn 54 84.2 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;