RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA588137" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA588137 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3115709 3115709 PRJNA588137_S_NODE_8403_length_247_cov_0.885057_g8370_i0 PRJNA588137 8403 247 0.885057 2.18609079 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 457 4.05e-124   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g8370 i0 100 15.5748987854251 247 0 100 0 1 247 632345 632591 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 3847 457 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
12043877 12043877 PRJNA588137_S_NODE_4630_length_281_cov_1.052885_g4597_i0 PRJNA588137 4630 281 1.052885 2.95860685 Leptotrichia wadei 157687 Bacteria Bacteria 514 2.75e-141   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g4597 i0 99.644 784.97153024911 281 1 100 0 1 281 1756581 1756861 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 220577 514 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
18416569 18416569 PRJNA588137_S_NODE_10195_length_243_cov_0.905882_g10162_i0 PRJNA588137 10195 243 0.905882 2.20129326 Leptotrichia wadei 157687 Bacteria Bacteria 388 1.47e-103   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g10162 i0 96.203 6.88065843621399 237 9 98 0 7 243 94908 94672 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 1672 388 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;