RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA588137" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA588137 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1840285 1840285 PRJNA588137_S_NODE_5422_length_265_cov_1.604167_g5389_i0 PRJNA588137 5422 265 1.604167 4.25104255 Lacipirellula parvula 2650471 Bacteria Bacteria 353 5.929999999999999e-93   NTclustered gi|1761017769|dbj|AP021861.1| 2650471 g5389 i0 90.875 26.4150943396226 263 24 99 0 3 265 1143913 1143651 Lacipirellula parvula PX69 DNA, complete genome blastn 7000 353 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae Lacipirellula Lacipirellula parvula
13318742 13318742 PRJNA588137_S_NODE_6971_length_250_cov_0.870056_g6938_i0 PRJNA588137 6971 250 0.870056 2.17514 Isosphaeraceae bacterium EP7 3139350 Bacteria Bacteria 150 7.799999999999999e-32   NTclustered gi|2719878338|gb|CP151667.1| 3139350 g6938 i0 82.022 0.712 178 31 71 1 30 207 2064019 2064195 Isosphaeraceae bacterium EP7 chromosome, complete genome blastn 178 150 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium EP7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;