RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA588137" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA588137 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3115714 3115714 PRJNA588137_S_NODE_903_length_497_cov_0.898585_g870_i0 PRJNA588137 903 497 0.898585 4.46596745 Naegleria pringsheimi 234921 Heterolobosea other_Eukaryota 747 0   NTclustered gi|2515557648|gb|OR045415.1| 234921 g870 i0 93.976 30.692152917505 498 22 100 7 1 497 5467 5957 Naegleria pringsheimi strain Singh(s) rDNA-containing extrachromosomal element genomic sequence; 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 15254 747 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria pringsheimi
8217991 8217991 PRJNA588137_S_NODE_8527_length_246_cov_0.890173_g8494_i0 PRJNA588137 8527 246 0.890173 2.18982558 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 257 4.39e-64   NTclustered gi|290993097|ref|XM_002679124.1| 5762 g8494 i0 86.008 0.98780487804878 243 31 98 3 1 242 3213 3453 Naegleria gruberi HEAT domain-containing protein (NAEGRDRAFT_79052), partial mRNA blastn 243 257 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13318761 13318761 PRJNA588137_S_NODE_8951_length_245_cov_1.226744_g8918_i0 PRJNA588137 8951 245 1.226744 3.0055228 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 329 9.12e-86   NTclustered gi|290995778|ref|XM_002680414.1| 5762 g8918 i0 90.984 0.995918367346939 244 22 99 0 1 244 2329 2086 Naegleria gruberi clathrin heavy chain (NAEGRDRAFT_78703), partial mRNA blastn 244 329 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
16441203 16441203 PRJNA588137_S_NODE_4833_length_277_cov_1.102941_g4800_i0 PRJNA588137 4833 277 1.102941 3.05514657 Naegleria 5761 Heterolobosea other_Eukaryota 436 6.019999999999999e-118   NTclustered gi|2651357798|gb|PP174311.1| 37103 g4800 i0 95.273 24.2743682310469 275 13 99 0 3 277 3261 3535 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6724 436 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
19691152 19691152 PRJNA588137_S_NODE_4376_length_286_cov_1.295775_g4343_i0 PRJNA588137 4376 286 1.295775 3.7059165 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.026   NTclustered gi|1031970221|gb|CP015655.1| 85057 g4343 i0 100 0.0979020979020979 28 0 10 0 192 219 50510 50537 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;