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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA577580 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9492409 9492409 PRJNA577580_P_NODE_14168_length_250_cov_1.983051_g14090_i0 PRJNA577580 14168 250 1.983051 4.9576275 Phytophthora colocasiae 129350 SAR_Eukaryotes SAR_Eukaryotes 198 2.75e-46   NTclustered gi|2308292407|gb|OK574296.1| 129350 g14090 i0 86.932 70.256 176 23 70 0 15 190 8437 8612 Phytophthora colocasiae voucher Fj20_1 mitochondrion, complete genome blastn 17564 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora colocasiae
10066655 10066655 PRJNA577580_P_NODE_2248_length_604_cov_3.306968_g2170_i0 PRJNA577580 2248 604 3.306968 19.97408672 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 303 1.5e-77   NTclustered gi|2431515601|ref|NC_070108.1| 230839 g2170 i0 78.794 75.5132450331126 481 81 78 12 89 562 2022 2488 Peronosclerospora sorghi isolate P6 mitochondrion, complete genome blastn 45610 303 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronosclerospora Peronosclerospora sorghi
12043094 12043094 PRJNA577580_P_NODE_14970_length_247_cov_1.534483_g14892_i0 PRJNA577580 14970 247 1.534483 3.79017301 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 270 5.659999999999999e-68   NTclustered gi|328802538|emb|FR832890.1| 890382 g14892 i0 87.554 86.9554655870445 233 29 94 0 14 246 1306 1074 Albugo laibachii Nc14, mitochondrial genomic contig NODE_36_length_2553_cov_1396.121460 blastn 21478 270 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
12043109 12043109 PRJNA577580_P_NODE_170_length_1628_cov_11.859807_g149_i0 PRJNA577580 170 1628 11.859807 193.07765796 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 756 0   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g149 i0 77.232 58.4846437346437 1344 272 82 30 135 1461 48027 49353 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 95213 756 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13317979 13317979 PRJNA577580_P_NODE_11991_length_267_cov_1.608247_g11913_i0 PRJNA577580 11991 267 1.608247 4.29401949 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 213 1.06e-50   NTclustered gi|2795026849|ref|XM_067926286.1| 4785 g11913 i0 81.203 98.7228464419476 266 48 99 2 1 265 527 263 Phytophthora cinnamomi succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial (IUM83_02375), partial mRNA blastn 26359 213 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17715985 17715985 PRJNA577580_P_NODE_10274_length_286_cov_2.070423_g10196_i0 PRJNA577580 10274 286 2.070423 5.92140978 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 86.1 2.61e-12   NTclustered gi|2311026826|gb|OP554785.1| 4798 g10196 i0 93.22 16.7342657342657 59 3 20 1 1 58 410 352 Pythium hydnosporum isolate R-28 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4786 86.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium hydnosporum
18415995 18415995 PRJNA577580_P_NODE_9595_length_295_cov_1.405405_g9517_i0 PRJNA577580 9595 295 1.405405 4.14594475 Phytopythium vexans 907947 SAR_Eukaryotes SAR_Eukaryotes 431 3.009999999999999e-116   NTclustered gi|90655144|gb|DQ361265.1| 907947 g9517 i0 92.929 100.996610169492 297 19 100 2 1 295 78 374 Pythium vexans large subunit ribosomal RNA gene, partial sequence blastn 29794 431 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
18989489 18989489 PRJNA577580_P_NODE_12075_length_266_cov_2.134715_g11997_i0 PRJNA577580 12075 266 2.134715 5.6783419 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 128 3.93e-25   NTclustered gi|1663822450|gb|MH730822.1| 184466 g11997 i0 93.103 32.4774436090226 87 6 33 0 178 264 858 772 Peronospora arborescens voucher GLM64105 28S ribosomal RNA gene, partial sequence blastn 8639 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora arborescens
18989496 18989496 PRJNA577580_P_NODE_455_length_1216_cov_23.739283_g417_i0 PRJNA577580 455 1216 23.739283 288.66968128 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 215 1.5e-50   NTclustered gi|813199071|ref|XR_001099870.1| 695850 g417 i0 85.446 20.8141447368421 213 23 32 7 730 938 866 658 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 25310 217 0.990783410138249 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
20264646 20264646 PRJNA577580_P_NODE_9076_length_302_cov_1.375546_g8998_i0 PRJNA577580 9076 302 1.375546 4.15414892 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 235 2.6e-57   NTclustered gi|813150484|ref|XM_012345499.1| 695850 g8998 i0 81.126 21.0132450331126 302 49 99 8 5 302 397 694 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S3a-2 mRNA blastn 6346 235 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22241105 22241105 PRJNA577580_P_NODE_12238_length_265_cov_1.145833_g12160_i0 PRJNA577580 12238 265 1.145833 3.03645745 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 484 2.0199999999999998e-132   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g12160 i0 99.623 109.369811320755 265 1 100 0 1 265 2145 2409 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 28983 484 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
22815300 22815300 PRJNA577580_P_NODE_17178_length_222_cov_5.221477_g17100_i0 PRJNA577580 17178 222 5.221477 11.59167894 Lagenidium 4802 SAR_Eukaryotes SAR_Eukaryotes 411 2.8199999999999996e-110   NTclustered gi|918464324|gb|KT257472.1| 4803 g17100 i0 100 100.045045045045 222 0 100 0 1 222 876 1097 Lagenidium giganteum internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22210 411 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;