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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA577580 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
564127 564127 PRJNA577580_P_NODE_5341_length_387_cov_1.324841_g5263_i0 PRJNA577580 5341 387 1.324841 5.12713467 Pristionchus lheritieri 70414 Nematoda Nematoda 237 9.51e-58   NTclustered gi|150982003|gb|EF634590.1| 70414 g5263 i0 78.754 12.9793281653747 353 75 91 0 32 384 392 40 Pristionchus lheritieri large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 5023 237 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus lheritieri
1839475 1839475 PRJNA577580_P_NODE_13402_length_254_cov_1.127072_g13324_i0 PRJNA577580 13402 254 1.127072 2.86276288 Strongyloides papillosus 174720 Nematoda Nematoda 178 3.65e-40   NTclustered gi|687022642|emb|LM525556.1| 174720 g13324 i0 81.466 70.5275590551181 232 30 87 10 9 229 219791 220020 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000002 blastn 17914 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
6942261 6942261 PRJNA577580_P_NODE_7326_length_332_cov_3.675676_g7248_i0 PRJNA577580 7326 332 3.675676 12.20324432 Strongyloides ratti 34506 Nematoda Nematoda 167 1.07e-36   NTclustered gi|1376148327|ref|XM_024654864.1| 34506 g7248 i0 83.616 10.4578313253012 177 29 53 0 113 289 523 699 Strongyloides ratti 14-3-3 protein zeta (SRAE_2000364600), partial mRNA blastn 3472 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
10768346 10768346 PRJNA577580_P_NODE_5689_length_375_cov_11.430464_g5611_i0 PRJNA577580 5689 375 11.430464 42.86424 Longidorus macrosoma 188093 Nematoda Nematoda 532 1.05e-146   NTclustered gi|49339465|gb|AY580055.1| 188093 g5611 i0 92.761 99.0586666666667 373 20 98 7 9 375 2568 2197 Longidorus macrosoma 28S ribosomal RNA gene, 28S-18S intergenic spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence blastn 37147 532 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Longidorus Longidorus macrosoma
12043087 12043087 PRJNA577580_P_NODE_13250_length_255_cov_1.510989_g13172_i0 PRJNA577580 13250 255 1.510989 3.85302195 Steinernema riobrave 52067 Nematoda Nematoda 130 1.04e-25   NTclustered gi|273547801|gb|GU174001.1| 52067 g13172 i0 90.722 32.4901960784314 97 9 38 0 64 160 950 1046 Steinernema riobrave strain Lennon 4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8285 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema riobrave
13318066 13318066 PRJNA577580_P_NODE_8131_length_317_cov_1.918033_g8053_i0 PRJNA577580 8131 317 1.918033 6.08016461 Heligmosomoides polygyrus 6339 Nematoda Nematoda 176 1.69e-39   NTclustered gi|157326536|gb|EU131541.1| 6339 g8053 i0 77.895 6.10410094637224 285 61 90 2 32 315 361 644 Heligmosomoides polygyrus tropomyosin mRNA, complete cds blastn 1935 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
14592920 14592920 PRJNA577580_P_NODE_4932_length_404_cov_1.274924_g4854_i0 PRJNA577580 4932 404 1.274924 5.15069296 Strongyloides ratti 34506 Nematoda Nematoda 433 1.1799999999999998e-116   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g4854 i0 86.364 212.680693069307 396 54 98 0 9 404 979 1374 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 85923 433 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14592937 14592937 PRJNA577580_P_NODE_7152_length_336_cov_5.277567_g7074_i0 PRJNA577580 7152 336 5.277567 17.73262512 Longidorus macrosoma 188093 Nematoda Nematoda 431 3.479999999999999e-116   NTclustered gi|49339465|gb|AY580055.1| 188093 g7074 i0 91.589 13.8154761904762 321 13 93 6 1 313 2196 1882 Longidorus macrosoma 28S ribosomal RNA gene, 28S-18S intergenic spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence blastn 4642 431 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Longidorus Longidorus macrosoma
17716005 17716005 PRJNA577580_P_NODE_7314_length_333_cov_1.153846_g7236_i0 PRJNA577580 7314 333 1.153846 3.84230718 Rhabditida 6236 Nematoda Nematoda 414 3.47e-111   NTclustered gi|1255552292|gb|MG195996.1| 435730 g7236 i0 89.254 100.903903903904 335 31 100 5 1 333 1663 1994 Rhigonema thysanophora isolate X-3981 large subunit ribosomal RNA gene, partial sequence blastn 33601 414 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhigonematidae Rhigonema Rhigonema thysanophora
18415968 18415968 PRJNA577580_P_NODE_5115_length_396_cov_5.832817_g5037_i0 PRJNA577580 5115 396 5.832817 23.09795532 Strongyloides papillosus 174720 Nematoda Nematoda 182 4.63e-41   NTclustered gi|690018634|emb|LM525872.1| 174720 g5037 i0 77.492 6.97222222222222 311 64 78 6 3 310 5144 4837 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000249 blastn 2761 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
19690498 19690498 PRJNA577580_P_NODE_5156_length_394_cov_12.442368_g5078_i0 PRJNA577580 5156 394 12.442368 49.02292992 Paracanthonchus caecus 73922 Nematoda Nematoda 492 1.8699999999999996e-134   NTclustered gi|2130729776|gb|OL416396.1| 73922 g5078 i0 90.86 94.010152284264 372 26 94 5 1 372 2056 1693 Paracanthonchus caecus isolate Pc-OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 37040 492 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Cyatholaimidae Paracanthonchus Paracanthonchus caecus
20966184 20966184 PRJNA577580_P_NODE_13417_length_253_cov_4.622222_g13339_i0 PRJNA577580 13417 253 4.622222 11.69422166 Ecumenicus monohystera 211289 Nematoda Nematoda 396 9.209999999999997e-106   NTclustered gi|51093905|gb|AY593013.1| 211289 g13339 i0 94.862 98.3794466403162 253 13 100 0 1 253 297 45 Ecumenicus monohystera clone EcumMon large subunit ribosomal RNA gene, partial sequence blastn 24890 396 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Qudsianematidae Ecumenicus Ecumenicus monohystera
22241146 22241146 PRJNA577580_P_NODE_2738_length_545_cov_20.970339_g2660_i0 PRJNA577580 2738 545 20.970339 114.28834755 Strongyloides ratti 34506 Nematoda Nematoda 261 8.18e-65   NTclustered gi|1376139113|ref|XM_024649811.1| 34506 g2660 i0 78.856 25.3284403669725 402 74 74 7 53 453 1 392 Strongyloides ratti Histone H3.3 (SRAE_1000270300), partial mRNA blastn 13804 261 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22241166 22241166 PRJNA577580_P_NODE_4458_length_425_cov_10.414773_g4380_i0 PRJNA577580 4458 425 10.414773 44.26278525 Paracanthonchus caecus 73922 Nematoda Nematoda 468 3.43e-127   NTclustered gi|2130729776|gb|OL416396.1| 73922 g4380 i0 90.556 110.752941176471 360 24 98 5 11 362 2354 1997 Paracanthonchus caecus isolate Pc-OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 47070 468 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Cyatholaimidae Paracanthonchus Paracanthonchus caecus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;