RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5667769 5667769 PRJNA577580_P_NODE_5005_length_401_cov_1.417683_g4927_i0 PRJNA577580 5005 401 1.417683 5.68490883 Arachnula sp. CL12 862247 SAR_Eukaryotes SAR_Eukaryotes 442 1.9499999999999988e-119   NTclustered gi|302026178|gb|GQ377695.1| 862247 g4927 i0 86.567 77.0299251870324 402 52 100 2 1 401 237 637 Arachnula sp. CL12 elongation factor 1 alpha mRNA, partial cds blastn 30889 442 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL12
12043070 12043070 PRJNA577580_P_NODE_1070_length_858_cov_2.453503_g1004_i0 PRJNA577580 1070 858 2.453503 21.05105574 Arachnula sp. CL12 862247 SAR_Eukaryotes SAR_Eukaryotes 483 2.59e-131   NTclustered gi|302026178|gb|GQ377695.1| 862247 g1004 i0 78.457 65.2657342657343 752 152 87 10 93 839 1283 537 Arachnula sp. CL12 elongation factor 1 alpha mRNA, partial cds blastn 55998 483 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL12
18415930 18415930 PRJNA577580_P_NODE_195_length_1574_cov_394.352432_g172_i0 PRJNA577580 195 1574 394.352432 6207.10727968 Arachnula sp. CL12 862247 SAR_Eukaryotes SAR_Eukaryotes 817 0   NTclustered gi|302026178|gb|GQ377695.1| 862247 g172 i0 78.264 67.3951715374841 1302 261 82 21 197 1487 1298 8 Arachnula sp. CL12 elongation factor 1 alpha mRNA, partial cds blastn 106080 817 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;