RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
564081 564081 PRJNA577580_P_NODE_17121_length_227_cov_2.805195_g17043_i0 PRJNA577580 17121 227 2.805195 6.36779265 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 189 1.4799999999999996e-43   NTclustered gi|2038004553|ref|XM_041615492.1| 7654 g17043 i0 84.375 56.8149779735683 192 30 85 0 28 219 298 489 PREDICTED: Lytechinus variegatus 40S ribosomal protein S16-like (LOC121420938), mRNA blastn 12897 189 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
1138080 1138080 PRJNA577580_P_NODE_14621_length_249_cov_0.886364_g14543_i0 PRJNA577580 14621 249 0.886364 2.20704636 Opisthokonta 33154 Echinodermata other_Eukaryota 196 9.84e-46   NTclustered gi|1229192121|ref|XM_022254307.1| 133434 g14543 i0 81.275 10 251 40 99 5 1 246 607 855 PREDICTED: Acanthaster planci eukaryotic initiation factor 4A-III (LOC110989727), mRNA blastn 2490 196 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
6942186 6942186 PRJNA577580_P_NODE_14286_length_250_cov_0.881356_g14208_i0 PRJNA577580 14286 250 0.881356 2.20339 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.023   NTclustered gi|1752357383|ref|XM_030983789.1| 7668 g14208 i0 100 0.112 28 0 11 0 37 64 739 766 PREDICTED: Strongylocentrotus purpuratus C-type lectin domain family 4 member E-like (LOC115923330), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;