RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA577580 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1138087 1138087 PRJNA577580_P_NODE_6281_length_358_cov_4.729825_g6203_i0 PRJNA577580 6281 358 4.729825 16.9327735 Catenariaceae 109872 Fungi Fungi 660 0   NTclustered gi|1866582779|gb|MT730954.1| 2420186 g6203 i0 100 75.2541899441341 357 0 99 0 1 357 4092 4448 Catenaria sp. isolate PL171 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26941 660 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.
6942266 6942266 PRJNA577580_P_NODE_7906_length_321_cov_1.258065_g7828_i0 PRJNA577580 7906 321 1.258065 4.03838865 Catenaria sp. 2420186 Fungi Fungi 588 1.8599999999999994e-163   NTclustered gi|1866582806|gb|MT730981.1| 2420186 g7828 i0 99.688 79.981308411215 321 1 100 0 1 321 3216 2896 Catenaria sp. isolate UM1566 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25674 588 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.
8217205 8217205 PRJNA577580_P_NODE_2007_length_642_cov_2.059754_g1930_i0 PRJNA577580 2007 642 2.059754 13.22362068 Blastocladiella emersonii 4808 Fungi Fungi 848 0   NTclustered gi|117422539|gb|EF064246.1| 4808 g1930 i0 90.528 44.8831775700935 644 57 100 2 1 642 1327 686 Blastocladiella emersonii elongation factor alpha-like protein mRNA, complete cds blastn 28815 848 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
17141714 17141714 PRJNA577580_P_NODE_8174_length_316_cov_2.839506_g8096_i0 PRJNA577580 8174 316 2.839506 8.97283896 Blastocladiella emersonii 4808 Fungi Fungi 252 2.72e-62   NTclustered gi|2440036|emb|X90411.1| 4808 g8096 i0 93.529 52.9398734177215 170 9 54 2 147 316 3376 3209 B.emersonii DNA for 28S ribosomal RNA gene blastn 16729 252 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
20264633 20264633 PRJNA577580_P_NODE_17316_length_202_cov_4.023256_g17238_i0 PRJNA577580 17316 202 4.023256 8.12697712 Catenariaceae 109872 Fungi Fungi 374 3.3e-99   NTclustered gi|1866582630|gb|MT730805.1| 2420186 g17238 i0 100 92.6287128712871 202 0 100 0 1 202 2609 2810 Catenaria sp. isolate JEL0748 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18711 374 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.
24790140 24790140 PRJNA577580_P_NODE_12000_length_267_cov_1.572165_g11922_i0 PRJNA577580 12000 267 1.572165 4.19768055 Blastocladiella emersonii 4808 Fungi Fungi 207 4.93e-49   NTclustered gi|209427640|ref|NC_011360.1| 4808 g11922 i0 85 23.8651685393258 220 15 92 14 2 208 32338 32124 Blastocladiella emersonii mitochondrion, complete genome blastn 6372 207 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;