RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2413517 2413517 PRJNA577580_P_NODE_10182_length_287_cov_2.271028_g10104_i0 PRJNA577580 10182 287 2.271028 6.51785036 Bdellovibrio 958 Bacteria Bacteria 274 5.199999999999998e-69   NTclustered gi|2663425168|dbj|AP029173.1| 3113893 g10104 i0 84.848 98.5714285714286 297 18 94 8 1 270 756516 756220 Bdellovibrio sp. CKG001 DNA, complete genome blastn 28290 274 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CKG001
6241736 6241736 PRJNA577580_P_NODE_5665_length_376_cov_2.983498_g5587_i0 PRJNA577580 5665 376 2.983498 11.21795248 Pseudobdellovibrio 2862745 Bacteria Bacteria 540 6.27e-149   NTclustered gi|507148233|ref|NR_103040.1| 453816 g5587 i0 93.681 167.808510638298 364 17 95 4 18 376 964 602 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 63096 540 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
15866701 15866701 PRJNA577580_P_NODE_2733_length_546_cov_2.604651_g2655_i0 PRJNA577580 2733 546 2.604651 14.22139446 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 588 3.31e-163   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g2655 i0 87.054 347.558608058608 533 54 95 11 25 545 3447552 3447023 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 189767 588 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;