RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 6 ✖

bioproject 1

  • PRJNA577580 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6942191 6942191 PRJNA577580_P_NODE_15226_length_246_cov_1.491329_g15148_i0 PRJNA577580 15226 246 1.491329 3.66866934 Zebrafish picornavirus 1 2304617 Viruses Viruses 390 4.15e-104   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g15148 i0 95.492 2.97560975609756 244 11 99 0 1 244 2137 2380 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 732 390 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
9492472 9492472 PRJNA577580_P_NODE_5308_length_388_cov_1.457143_g5230_i0 PRJNA577580 5308 388 1.457143 5.65371484 Zebrafish picornavirus 1 2304617 Viruses Viruses 695 0   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g5230 i0 98.969 3 388 4 100 0 1 388 7551 7938 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 1164 695 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
12043075 12043075 PRJNA577580_P_NODE_11330_length_274_cov_0.990050_g11252_i0 PRJNA577580 11330 274 0.99005 2.712737 Sopafab virus 3131770 Viruses Viruses 255 1.79e-63   NTclustered gi|2717323354|gb|PP174071.1| 3131770 g11252 i0 84.043 68.1824817518248 282 27 97 12 10 274 310 30 MAG: Sopafab virus isolate SP1C_k141_220867 genomic sequence blastn 18682 255 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Sopafab virus
12043153 12043153 PRJNA577580_P_NODE_6130_length_363_cov_1.496552_g6052_i0 PRJNA577580 6130 363 1.496552 5.43248376 Zebrafish picornavirus 1 2304617 Viruses Viruses 623 5.819999999999999e-174   NTclustered gi|1990739381|tpg|BK011179.1| 2304617 g6052 i0 98.31 2.93388429752066 355 6 98 0 1 355 4198 3844 TPA_asm: Zebrafish picornavirus 1 strain NCSZCF/ZfPV/2015/North Carolina/USA, complete genome blastn 1065 623 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
13318010 13318010 PRJNA577580_P_NODE_1891_length_661_cov_16.153061_g1816_i0 PRJNA577580 1891 661 16.153061 106.77173321 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.018   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g1816 i0 100 0.0438729198184569 29 0 4 0 1 29 7 35 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
17141721 17141721 PRJNA577580_P_NODE_9134_length_301_cov_1.478070_g9056_i0 PRJNA577580 9134 301 1.47807 4.4489907 Zebrafish picornavirus 1 2304617 Viruses Viruses 529 1.0599999999999996e-145   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g9056 i0 98.339 3 301 5 100 0 1 301 4728 4428 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 903 529 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;