RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 4 ✖

bioproject 1

  • PRJNA577580 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5667781 5667781 PRJNA577580_P_NODE_6065_length_364_cov_6.412371_g5987_i0 PRJNA577580 6065 364 6.412371 23.34103044 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.003   NTclustered gi|2733867141|gb|PP812520.1| 440571 g5987 i0 100 0.409340659340659 30 0 8 0 1 30 74 103 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 149 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
13318023 13318023 PRJNA577580_P_NODE_2691_length_550_cov_28.035639_g2613_i0 PRJNA577580 2691 550 28.035639 154.1960145 Collodictyon triciliatum 190325 Root_unresolved Root_unresolved 191 1.1e-43   NTclustered gi|1200177733|gb|MF039367.1| 190325 g2613 i0 91.367 23 139 12 25 0 325 463 4888 4750 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12650 191 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
15866676 15866676 PRJNA577580_P_NODE_14393_length_249_cov_2.602273_g14315_i0 PRJNA577580 14393 249 2.602273 6.47965977 Diphylleia rotans 190327 Root_unresolved Root_unresolved 75 4.81e-9   NTclustered gi|1200177731|gb|MF039365.1| 190327 g14315 i0 87.879 14.7028112449799 66 5 25 2 24 86 3412 3477 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3661 75 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
22241150 22241150 PRJNA577580_P_NODE_2858_length_531_cov_8.539301_g2780_i0 PRJNA577580 2858 531 8.539301 45.34368831 Collodictyon triciliatum 190325 Root_unresolved Root_unresolved 309 2.8e-79   NTclustered gi|1200177733|gb|MF039367.1| 190325 g2780 i0 80.134 47.2372881355932 448 61 82 20 69 503 3187 2755 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25083 309 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;