RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA577580" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6241718 6241718 PRJNA577580_P_NODE_12785_length_259_cov_2.956989_g12707_i0 PRJNA577580 12785 259 2.956989 7.65860151 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 333 7.519999999999999e-87   NTclustered gi|116222182|gb|DQ980467.1| 41120 g12707 i0 93.333 86.7567567567568 225 15 87 0 35 259 2720 2944 Apusomonas proboscidea clone aplsu large subunit ribosomal RNA gene, partial sequence blastn 22470 333 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
23516450 23516450 PRJNA577580_P_NODE_2059_length_633_cov_2.473214_g1982_i0 PRJNA577580 2059 633 2.473214 15.65544462 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 154 1.68e-32   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g1982 i0 88.8 18.86887835703 125 14 20 0 396 520 5178 5302 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11944 154 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
25364418 25364418 PRJNA577580_P_NODE_4360_length_430_cov_2.184874_g4282_i0 PRJNA577580 4360 430 2.184874 9.3949582 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 137 1.11e-27   NTclustered gi|761380055|ref|NC_026452.1| 529818 g4282 i0 74.436 31.1581395348837 399 64 85 24 10 374 814 420 Thecamonas trahens strain ATCC 50062 mitochondrion, complete genome blastn 13398 137 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;