RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA576995" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA576995 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20962747 20962747 PRJNA576995_P_NODE_20257_length_335_cov_1.931298_g19665_i0 PRJNA576995 20257 335 1.931298 6.4698483 Nannocystis punicea 2995304 Bacteria Bacteria 340 6.019999999999999e-89   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g19665 i0 88.153 80.3283582089552 287 32 85 2 42 327 5377562 5377277 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 26910 340 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
20963132 20963132 PRJNA576995_P_NODE_617_length_1721_cov_5.493325_g498_i0 PRJNA576995 617 1721 5.493325 94.54012325 Pendulispora albinea 2741071 Bacteria Bacteria 2170 0   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g498 i0 89.544 145.398024404416 1731 156 99 19 3 1721 7190402 7192119 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 250230 2170 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;