RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA576995" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA576995 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13314792 13314792 PRJNA576995_P_NODE_32471_length_264_cov_1.727749_g31879_i0 PRJNA576995 32471 264 1.727749 4.56125736 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.024   NTclustered gi|2912994531|dbj|AP039599.1| 145626 g31879 i0 100 0.106060606060606 28 0 11 0 41 68 11070458 11070485 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 18, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
14589620 14589620 PRJNA576995_P_NODE_32812_length_262_cov_1.629630_g32220_i0 PRJNA576995 32812 262 1.62963 4.2696306 Biomphalaria glabrata 6526 Mollusca Mollusca 193 1.35e-44   NTclustered gi|2502109311|ref|XM_013241081.2| 6526 g32220 i0 86.517 58.8320610687023 178 20 67 4 69 244 302 127 PREDICTED: Biomphalaria glabrata 60S ribosomal protein L27a-like (LOC106079852), mRNA blastn 15414 193 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
16439607 16439607 PRJNA576995_P_NODE_25873_length_300_cov_1.696035_g25281_i0 PRJNA576995 25873 300 1.696035 5.088105 Metazoa 33208 Mollusca Mollusca 241 5.55e-59   NTclustered gi|2441993691|ref|XM_053520375.1| 6596 g25281 i0 81.944 7.913333333333331 288 48 95 4 1 286 5737 6022 PREDICTED: Mercenaria mercenaria pre-mRNA-processing-splicing factor 8 (LOC128547464), mRNA blastn 2374 243 0.991769547325103 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
17138017 17138017 PRJNA576995_P_NODE_10114_length_487_cov_1.285024_g9522_i0 PRJNA576995 10114 487 1.285024 6.25806688 Littorina saxatilis 31220 Mollusca Mollusca 52.8 0.047   NTclustered gi|2868642964|ref|XM_070318909.1| 31220 g9522 i0 100 0.741273100616016 28 0 6 0 20 47 537 510 PREDICTED: Littorina saxatilis protein CDV3 homolog (LOC138947435), mRNA blastn 361 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
17138504 17138504 PRJNA576995_P_NODE_42894_length_241_cov_1.011905_g42302_i0 PRJNA576995 42894 241 1.011905 2.43869105 Haliotis rubra 36100 Mollusca Mollusca 63.9 1e-5   NTclustered gi|2194115385|ref|XM_046713758.1| 36100 g42302 i0 87.273 4.87551867219917 55 7 23 0 176 230 1630 1684 PREDICTED: Haliotis rubra pescadillo-like (LOC124278023), mRNA blastn 1175 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rubra
22237458 22237458 PRJNA576995_P_NODE_12178_length_435_cov_2.698895_g11586_i0 PRJNA576995 12178 435 2.698895 11.74019325 Bradybaena similaris 145626 Mollusca Mollusca 75 8.97e-9   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g11586 i0 81 6.35402298850575 100 14 22 3 135 231 32000417 32000320 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 2764 75 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24786897 24786897 PRJNA576995_P_NODE_29360_length_281_cov_2.466346_g28768_i0 PRJNA576995 29360 281 2.466346 6.93043226 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.026   NTclustered gi|2912981848|dbj|AP039587.1| 145626 g28768 i0 100 0.099644128113879 28 0 10 0 252 279 84798217 84798244 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 6, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;