RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA576995" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA576995 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4965109 4965109 PRJNA576995_P_NODE_5344_length_699_cov_2.750799_g4784_i0 PRJNA576995 5344 699 2.750799 19.22808501 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 416 2.15e-111   NTclustered gi|501417103|gb|JX481317.1| 137621 g4784 i0 77.924 83.2989985693848 684 139 97 10 18 695 1280 603 Arcyria cinerea voucher AMFD433 elongation factor 1A (EF1A) gene, partial cds blastn 58226 416 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
9489191 9489191 PRJNA576995_P_NODE_36328_length_250_cov_0.813559_g35736_i0 PRJNA576995 36328 250 0.813559 2.0338975 Mastigella erinacea 1580587 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|730326714|gb|KJ879569.1| 1580587 g35736 i0 96.875 0.256 32 0 13 1 219 250 709 739 Mastigella erinacea strain LARNAKA2N clone 6 actin gene, partial cds blastn 64 52.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida   Mastigella Mastigella erinacea
10765017 10765017 PRJNA576995_P_NODE_31189_length_272_cov_1.030151_g30597_i0 PRJNA576995 31189 272 1.030151 2.80201072 Dictyostelium purpureum 5786 Evosea other_Eukaryota 147 1.11e-30   NTclustered gi|330842692|ref|XM_003293259.1| 5786 g30597 i0 80 10.375 205 36 74 4 52 252 1970 1767 Dictyostelium purpureum elongation factor 2 (DICPUDRAFT_58424), mRNA blastn 2822 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
17714912 17714912 PRJNA576995_P_NODE_37634_length_248_cov_0.880000_g37042_i0 PRJNA576995 37634 248 0.88 2.1824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.002   NTclustered gi|76563896|tpd|BR000215.1| 44689 g37042 i0 100 1.33064516129032 30 0 12 0 17 46 308 279 TPA_exp: Dictyostelium discoideum recA gene for RecA, complete cds blastn 330 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;