RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA576995" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA576995 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
560851 560851 PRJNA576995_P_NODE_31881_length_268_cov_1.256410_g31289_i0 PRJNA576995 31881 268 1.25641 3.3671788 Micromonas commoda 296587 Plants Plants 224 4.909999999999999e-54   NTclustered gi|255081109|ref|XM_002504075.1| 296587 g31289 i0 81.784 45.9514925373134 269 47 100 2 1 268 7 274 Micromonas commoda predicted protein partial mRNA blastn 12315 224 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
3111711 3111711 PRJNA576995_P_NODE_37483_length_248_cov_0.880000_g36891_i0 PRJNA576995 37483 248 0.88 2.1824 Chlorella variabilis 554065 Plants Plants 176 1.28e-39   NTclustered gi|552825269|ref|XM_005846724.1| 554065 g36891 i0 80 4.42741935483871 240 46 96 2 4 242 554 316 Chlorella variabilis 26S proteasome AAA-ATPase subunit RPT6a (CHLNCDRAFT_135304) mRNA, complete cds blastn 1098 176 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
6240614 6240614 PRJNA576995_P_NODE_9445_length_507_cov_1.419355_g8855_i0 PRJNA576995 9445 507 1.419355 7.19612985 Chlorellaceae 35461 Plants Plants 324 9.52e-84   NTclustered gi|2724824453|gb|PP746560.1| 173497 g8855 i0 79.867 66.6587771203156 452 83 88 7 6 453 50202 49755 Pseudochlorella signiensis culture SAG:7.90 mitochondrion, complete genome blastn 33796 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
10765289 10765289 PRJNA576995_P_NODE_8389_length_543_cov_2.661702_g7802_i0 PRJNA576995 8389 543 2.661702 14.45304186 Chloropicon roscoffensis 1461544 Plants Plants 141 1.11e-28   NTclustered gi|2863418128|gb|CP145462.1| 1461544 g7802 i0 84 2.96685082872928 150 21 27 3 337 484 130232 130380 Chloropicon roscoffensis strain RCC2335 chromosome 3 blastn 1611 141 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon roscoffensis
17138408 17138408 PRJNA576995_P_NODE_33634_length_257_cov_1.451087_g33042_i0 PRJNA576995 33634 257 1.451087 3.72929359 Monoraphidium neglectum 145388 Plants Plants 58.4 5.02e-4   NTclustered gi|926777873|ref|XM_014041957.1| 145388 g33042 i0 97.059 1.33073929961089 34 1 13 0 80 113 1140 1173 Monoraphidium neglectum hypothetical protein mRNA blastn 342 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
19687235 19687235 PRJNA576995_P_NODE_31356_length_271_cov_1.151515_g30764_i0 PRJNA576995 31356 271 1.151515 3.12060565 Mantoniella tinhauana 3097027 Plants Plants 196 1.08e-45   NTclustered gi|2735153277|gb|CP140062.1| 3097027 g30764 i0 81.405 1.80073800738007 242 43 89 2 1 241 795144 795384 Mantoniella tinhauana isolate LFS chromosome 1 blastn 488 196 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;