contig_metadata
19 rows where analysis = "blastn", bioproject = "PRJNA576995" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 560904 | 560904 | PRJNA576995_P_NODE_35761_length_250_cov_0.870056_g35169_i0 | PRJNA576995 | 35761 | 250 | 0.870056 | 2.17514 | Oscillospiraceae bacterium | 2485925 | Bacteria | Bacteria | 56.5 | 0.002 | NTclustered | gi|2188895606|dbj|AP025583.1| | 2485925 | g35169 | i0 | 100 | 0.24 | 30 | 0 | 12 | 0 | 87 | 116 | 2848823 | 2848794 | Oscillospiraceae bacterium CE91-St40 DNA, complete genome | blastn | 60 | 56.5 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Oscillospiraceae | Oscillospiraceae bacterium | |||
| 1136988 | 1136988 | PRJNA576995_P_NODE_32521_length_264_cov_1.403141_g31929_i0 | PRJNA576995 | 32521 | 264 | 1.403141 | 3.70429224 | Bacillales | 1385 | Bacteria | Bacteria | 483 | 7.219999999999998e-132 | NTclustered | gi|1176884116|gb|CP020463.1| | 1282 | g31929 | i0 | 99.621 | 533.598484848485 | 264 | 1 | 100 | 0 | 1 | 264 | 750197 | 749934 | Staphylococcus epidermidis strain 1457 chromosome, complete genome | blastn | 140870 | 483 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 1137004 | 1137004 | PRJNA576995_P_NODE_39641_length_246_cov_0.890173_g39049_i0 | PRJNA576995 | 39641 | 246 | 0.890173 | 2.18982558 | Pseudolactococcus | 3436058 | Bacteria | Bacteria | 455 | 1.4500000000000002e-123 | NTclustered | gi|802122382|emb|LN774769.1| | 297352 | g39049 | i0 | 100 | 553.849593495935 | 246 | 0 | 100 | 0 | 1 | 246 | 33022 | 32777 | Lactococcus piscium MKFS47 genome assembly L_piscium, chromosome : I | blastn | 136247 | 455 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Pseudolactococcus | Pseudolactococcus piscium | ||
| 2412403 | 2412403 | PRJNA576995_P_NODE_36382_length_249_cov_1.426136_g35790_i0 | PRJNA576995 | 36382 | 249 | 1.426136 | 3.55107864 | Streptococcus | 1301 | Bacteria | Bacteria | 455 | 1.47e-123 | NTclustered | gi|1578096036|emb|LR216035.1| | 1313 | g35790 | i0 | 99.598 | 337 | 249 | 1 | 100 | 0 | 1 | 249 | 1835234 | 1834986 | Streptococcus pneumoniae isolate SA_GPS_SP505-sc-1895675 genome assembly, chromosome: 1 | blastn | 83913 | 455 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus pneumoniae | ||
| 5664470 | 5664470 | PRJNA576995_P_NODE_33905_length_255_cov_1.692308_g33313_i0 | PRJNA576995 | 33905 | 255 | 1.692308 | 4.3153854 | Vescimonas coprocola | 2714355 | Bacteria | Bacteria | 52.8 | 0.023 | NTclustered | gi|2025053910|dbj|AP023418.1| | 2714355 | g33313 | i0 | 100 | 0.109803921568627 | 28 | 0 | 11 | 0 | 80 | 107 | 1591305 | 1591332 | Vescimonas coprocola MM50 DNA, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Oscillospiraceae | Vescimonas | Vescimonas coprocola | ||
| 6240570 | 6240570 | PRJNA576995_P_NODE_39705_length_246_cov_0.890173_g39113_i0 | PRJNA576995 | 39705 | 246 | 0.890173 | 2.18982558 | Staphylococcus | 1279 | Bacteria | Bacteria | 455 | 1.4500000000000002e-123 | NTclustered | gi|1830032422|gb|CP050982.1| | 1290 | g39113 | i0 | 100 | 98.0894308943089 | 246 | 0 | 100 | 0 | 1 | 246 | 1854548 | 1854793 | Staphylococcus hominis strain FDAARGOS_745 chromosome | blastn | 24130 | 455 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus hominis | ||
| 6938942 | 6938942 | PRJNA576995_P_NODE_35346_length_251_cov_0.865169_g34754_i0 | PRJNA576995 | 35346 | 251 | 0.865169 | 2.17157419 | Desemzia incerta | 82801 | Bacteria | Bacteria | 392 | 1.18e-104 | NTclustered | gi|2511735789|gb|CP126128.1| | 82801 | g34754 | i0 | 94.821 | 539.482071713147 | 251 | 13 | 100 | 0 | 1 | 251 | 390620 | 390870 | Desemzia incerta strain EGm139 chromosome, complete genome | blastn | 135410 | 392 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Desemzia | Desemzia incerta | ||
| 7514807 | 7514807 | PRJNA576995_P_NODE_32326_length_265_cov_1.598958_g31734_i0 | PRJNA576995 | 32326 | 265 | 1.598958 | 4.2372387 | Exiguobacterium | 33986 | Bacteria | Bacteria | 484 | 2.0199999999999998e-132 | NTclustered | gi|2274429004|gb|CP101462.1| | 33987 | g31734 | i0 | 99.623 | 753.788679245283 | 265 | 1 | 100 | 0 | 1 | 265 | 12964 | 13228 | Exiguobacterium aurantiacum strain CX2 chromosome, complete genome | blastn | 199754 | 484 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Exiguobacterium | Exiguobacterium aurantiacum | |||
| 8789832 | 8789832 | PRJNA576995_P_NODE_33607_length_257_cov_1.673913_g33015_i0 | PRJNA576995 | 33607 | 257 | 1.673913 | 4.30195641 | Streptococcus | 1301 | Bacteria | Bacteria | 475 | 1.1699999999999999e-129 | NTclustered | gi|926460225|gb|CP012588.1| | 1308 | g33015 | i0 | 100 | 558.385214007782 | 257 | 0 | 100 | 0 | 1 | 257 | 161660 | 161916 | Streptococcus thermophilus strain MN-BM-A01, complete genome | blastn | 143505 | 475 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus thermophilus | ||
| 12615963 | 12615963 | PRJNA576995_P_NODE_24150_length_310_cov_2.573840_g23558_i0 | PRJNA576995 | 24150 | 310 | 2.57384 | 7.978904 | root | 1 | Root_unresolved | Root_unresolved | 573 | 4.999999999999998e-159 | NTclustered | gi|529813127|gb|KF306379.1| | 1292 | g23558 | i0 | 100 | 105.167741935484 | 310 | 0 | 100 | 0 | 1 | 310 | 1402 | 1093 | Staphylococcus warneri strain y357 16S ribosomal RNA gene, partial sequence | blastn | 32602 | 573 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus warneri | ||
| 15863550 | 15863550 | PRJNA576995_P_NODE_39953_length_245_cov_0.895349_g39361_i0 | PRJNA576995 | 39953 | 245 | 0.895349 | 2.19360505 | Staphylococcus cohnii | 29382 | Bacteria | Bacteria | 453 | 5.1900000000000006e-123 | NTclustered | gi|1373834432|emb|LT963440.1| | 29382 | g39361 | i0 | 100 | 7.88163265306122 | 245 | 0 | 100 | 0 | 1 | 245 | 412082 | 412326 | Staphylococcus cohnii isolate Staphylococcus cohnii ATCC 29974 genome assembly, chromosome: I | blastn | 1931 | 453 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus cohnii | ||
| 17138450 | 17138450 | PRJNA576995_P_NODE_37854_length_248_cov_0.880000_g37262_i0 | PRJNA576995 | 37854 | 248 | 0.88 | 2.1824 | Granulicatella elegans | 137732 | Bacteria | Bacteria | 451 | 1.89e-122 | NTclustered | gi|2127543886|gb|CP085953.1| | 137732 | g37262 | i0 | 99.595 | 457.334677419355 | 247 | 1 | 99 | 0 | 1 | 247 | 106245 | 105999 | Granulicatella elegans strain FDAARGOS_1559 chromosome, complete genome | blastn | 113419 | 451 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Granulicatella | Granulicatella elegans | ||
| 18988327 | 18988327 | PRJNA576995_P_NODE_40855_length_244_cov_0.900585_g40263_i0 | PRJNA576995 | 40855 | 244 | 0.900585 | 2.1974274 | Sulfobacillus | 28033 | Bacteria | Bacteria | 52.8 | 0.022 | NTclustered | gi|361052061|gb|CP003179.1| | 679936 | g40263 | i0 | 100 | 0.229508196721311 | 28 | 0 | 11 | 0 | 170 | 197 | 1915286 | 1915313 | Sulfobacillus acidophilus DSM 10332, complete genome | blastn | 56 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiales Family XVII. Incertae Sedis | Sulfobacillus | Sulfobacillus acidophilus | ||
| 18988330 | 18988330 | PRJNA576995_P_NODE_42355_length_242_cov_0.911243_g41763_i0 | PRJNA576995 | 42355 | 242 | 0.911243 | 2.20520806 | Mediterraneibacter | 2316020 | Bacteria | Bacteria | 448 | 2.3799999999999995e-121 | NTclustered | gi|1988050162|gb|CP070036.1| | 33038 | g41763 | i0 | 100 | 469.392561983471 | 242 | 0 | 100 | 0 | 1 | 242 | 441443 | 441202 | Mediterraneibacter gnavus strain FDAARGOS_1342 chromosome, complete genome | blastn | 113593 | 448 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Mediterraneibacter | Mediterraneibacter gnavus | ||
| 20263465 | 20263465 | PRJNA576995_P_NODE_31516_length_270_cov_1.299492_g30924_i0 | PRJNA576995 | 31516 | 270 | 1.299492 | 3.5086284 | Staphylococcus | 1279 | Bacteria | Bacteria | 497 | 2.6399999999999998e-136 | NTclustered | gi|1714026535|gb|CP031277.1| | 1290 | g30924 | i0 | 100 | 99.7148148148148 | 269 | 0 | 99 | 0 | 2 | 270 | 1643327 | 1643059 | Staphylococcus hominis strain 19A chromosome, complete genome | blastn | 26923 | 497 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus hominis | ||
| 20263480 | 20263480 | PRJNA576995_P_NODE_37636_length_248_cov_0.880000_g37044_i0 | PRJNA576995 | 37636 | 248 | 0.88 | 2.1824 | Bacillus | 1386 | Bacteria | Bacteria | 459 | 1.13e-124 | NTclustered | gi|2029954974|gb|CP047645.1| | 1423 | g37044 | i0 | 100 | 100 | 248 | 0 | 100 | 0 | 1 | 248 | 1581740 | 1581493 | Bacillus subtilis strain PMB102 chromosome | blastn | 24800 | 459 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus subtilis | ||
| 21538927 | 21538927 | PRJNA576995_P_NODE_35197_length_251_cov_0.865169_g34605_i0 | PRJNA576995 | 35197 | 251 | 0.865169 | 2.17157419 | Anaerococcus | 165779 | Bacteria | Bacteria | 464 | 2.47e-126 | NTclustered | gi|1374529452|ref|NR_076129.2| | 33034 | g34605 | i0 | 100 | 392.051792828685 | 251 | 0 | 100 | 0 | 1 | 251 | 2418 | 2168 | Anaerococcus prevotii strain DSM 20548 23S ribosomal RNA, complete sequence | blastn | 98405 | 464 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Anaerococcus | Anaerococcus prevotii | ||
| 22237944 | 22237944 | PRJNA576995_P_NODE_42198_length_242_cov_0.911243_g41606_i0 | PRJNA576995 | 42198 | 242 | 0.911243 | 2.20520806 | Paenibacillus sp. CAA11 | 1532905 | Bacteria | Bacteria | 54.7 | 0.006 | NTclustered | gi|1379398788|gb|CP028922.1| | 1532905 | g41606 | i0 | 100 | 0.119834710743802 | 29 | 0 | 12 | 0 | 40 | 68 | 1854718 | 1854690 | Paenibacillus sp. CAA11 chromosome, complete genome | blastn | 29 | 54.7 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus sp. CAA11 | ||
| 23513109 | 23513109 | PRJNA576995_P_NODE_31419_length_270_cov_1.969543_g30827_i0 | PRJNA576995 | 31419 | 270 | 1.969543 | 5.3177661 | Ornithinibacillus sp. FSL M8-0202 | 2921616 | Bacteria | Bacteria | 436 | 5.8499999999999985e-118 | NTclustered | gi|2709838836|gb|CP150248.1| | 2921616 | g30827 | i0 | 95.911 | 890.914814814815 | 269 | 11 | 99 | 0 | 1 | 269 | 1020350 | 1020082 | Ornithinibacillus sp. FSL M8-0202 chromosome, complete genome | blastn | 240547 | 436 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Ornithinibacillus | Ornithinibacillus sp. FSL M8-0202 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;