RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA576995" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 16 ✖

bioproject 1

  • PRJNA576995 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
560707 560707 PRJNA576995_P_NODE_22561_length_320_cov_1.246964_g21969_i0 PRJNA576995 22561 320 1.246964 3.9902848 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 89.8 2.29e-13   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g21969 i0 90 0.35625 70 6 22 1 1 69 5 74 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 114 89.8 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
560723 560723 PRJNA576995_P_NODE_23521_length_314_cov_1.278008_g22929_i0 PRJNA576995 23521 314 1.278008 4.01294512 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 132 3.67e-26   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g22929 i0 100 1.52547770700637 71 0 23 0 244 314 72 2 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 479 132 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
560907 560907 PRJNA576995_P_NODE_36021_length_250_cov_0.870056_g35429_i0 PRJNA576995 36021 250 0.870056 2.17514 Hepacivirus hominis 3052230 Viruses Viruses 52.8 0.023   NTclustered gi|1783579944|gb|MN628595.1| 3052230 g35429 i0 100 0.112 28 0 11 0 223 250 28 1 Hepacivirus hominis strain SL4 polyprotein (POLY) gene, complete cds blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Hepacivirus Hepacivirus hominis
1835838 1835838 PRJNA576995_P_NODE_11902_length_442_cov_1.650407_g11310_i0 PRJNA576995 11902 442 1.650407 7.29479894 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 76.8 2.54e-9   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g11310 i0 100 0.714932126696833 41 0 9 0 402 442 63 23 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 316 76.8 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
1836317 1836317 PRJNA576995_P_NODE_43522_length_241_cov_0.886905_g42930_i0 PRJNA576995 43522 241 0.886905 2.13744105 Monilinia fructicola binarnavirus 1 2964624 Viruses Viruses 82.4 2.77e-11   NTclustered gi|2273758213|gb|ON038387.1| 2964624 g42930 i0 88.235 1.39419087136929 68 8 28 0 1 68 2465 2398 Monilinia fructicola binarnavirus 1 RNA-dependent RNA polymerase gene, complete cds blastn 336 82.4 1 Viruses   Orthornavirae       Birnaviridae   Monilinia fructicola binarnavirus 1
4388060 4388060 PRJNA576995_P_NODE_20864_length_331_cov_1.193798_g20272_i0 PRJNA576995 20864 331 1.193798 3.95147138 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 89.8 2.38e-13   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g20272 i0 100 0.145015105740181 48 0 15 0 1 48 1 48 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 48 89.8 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
4388123 4388123 PRJNA576995_P_NODE_24084_length_311_cov_1.180672_g23492_i0 PRJNA576995 24084 311 1.180672 3.67188992 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 130 1.31e-25   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g23492 i0 100 1.54340836012862 70 0 23 0 242 311 73 4 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 480 130 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
5664563 5664563 PRJNA576995_P_NODE_42845_length_241_cov_1.375000_g42253_i0 PRJNA576995 42845 241 1.375 3.31375 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 104 5.9e-18   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g42253 i0 100 0.609958506224066 56 0 23 0 1 56 1 56 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 147 104 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
9489185 9489185 PRJNA576995_P_NODE_35968_length_250_cov_0.870056_g35376_i0 PRJNA576995 35968 250 0.870056 2.17514 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 80.5 1.04e-10   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g35376 i0 100 0.172 43 0 17 0 1 43 43 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 43 80.5 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
14589614 14589614 PRJNA576995_P_NODE_32432_length_265_cov_0.968750_g31840_i0 PRJNA576995 32432 265 0.96875 2.5671875 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 110 1.42e-19   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g31840 i0 98.387 0.577358490566038 62 1 23 0 1 62 9 70 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 153 110 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
15863086 15863086 PRJNA576995_P_NODE_11193_length_458_cov_1.246753_g10601_i0 PRJNA576995 11193 458 1.246753 5.71012874 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 121 1.2e-22   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g10601 i0 97.222 0.943231441048035 72 1 16 1 1 71 2 73 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 432 121 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
19687006 19687006 PRJNA576995_P_NODE_16596_length_368_cov_1.332203_g16004_i0 PRJNA576995 16596 368 1.332203 4.90250704 Enterovirus alphacoxsackie 3428500 Viruses Viruses 52.8 0.035   NTclustered gi|2148068742|gb|MN541018.1| 31704 g16004 i0 100 0.0760869565217391 28 0 8 0 228 255 3424 3397 Coxsackievirus A16 strain CV-A16/SWG50/SD/CHN/2018 polyprotein gene, partial cds blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Enterovirus Enterovirus alphacoxsackie
20962883 20962883 PRJNA576995_P_NODE_28257_length_287_cov_1.439252_g27665_i0 PRJNA576995 28257 287 1.439252 4.13065324 Orius laevigatus associated narnavirus 2 3344919 Viruses Viruses 69.4 2.64e-7   NTclustered gi|2802859156|gb|PP908628.1| 3344919 g27665 i0 100 0.857142857142857 37 0 13 0 251 287 2450 2486 MAG: Orius laevigatus associated narnavirus 2 isolate OlaeANaV2 polyprotein gene, complete cds blastn 246 69.4 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae Narnavirus Orius laevigatus associated narnavirus 2
20962926 20962926 PRJNA576995_P_NODE_31757_length_269_cov_1.173469_g31165_i0 PRJNA576995 31757 269 1.173469 3.15663161 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 130 1.11e-25   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g31165 i0 100 1.69516728624535 70 0 26 0 1 70 1 70 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 456 130 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
23512798 23512798 PRJNA576995_P_NODE_13399_length_411_cov_1.976331_g12807_i0 PRJNA576995 13399 411 1.976331 8.12272041 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 126 2.2899999999999998e-24   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g12807 i0 96.154 1.05839416058394 78 2 19 1 1 77 1 78 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 435 126 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
24786914 24786914 PRJNA576995_P_NODE_30440_length_276_cov_1.098522_g29848_i0 PRJNA576995 30440 276 1.098522 3.03192072 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 115 3.1900000000000003e-21   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g29848 i0 100 1.51811594202899 62 0 22 0 1 62 6 67 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 419 115 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;