RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA576995" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA576995 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2412384 2412384 PRJNA576995_P_NODE_31142_length_272_cov_1.226131_g30550_i0 PRJNA576995 31142 272 1.226131 3.33507632 Engelhardtia 139931 Bacteria Bacteria 52.8 0.025   NTclustered gi|1712638177|gb|CP036287.1| 2528011 g30550 i0 100 0.205882352941176 28 0 10 0 36 63 4944568 4944541 Planctomycetes bacterium Pla133 chromosome, complete genome blastn 56 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia     Engelhardtia Engelhardtia mirabilis
3111263 3111263 PRJNA576995_P_NODE_10283_length_481_cov_4.529412_g9691_i0 PRJNA576995 10283 481 4.529412 21.78647172 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 52.8 0.047   NTclustered gi|2874253690|emb|OY969416.1| 412056 g9691 i0 100 0.0582120582120582 28 0 6 0 39 66 4483466 4483493 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
6240545 6240545 PRJNA576995_P_NODE_29665_length_280_cov_1.241546_g29073_i0 PRJNA576995 29665 280 1.241546 3.4763288 Rohdeia 3405237 Bacteria Bacteria 172 1.8999999999999995e-38   NTclustered gi|2874254106|emb|OY970189.1| 100233 g29073 i0 79.07 60.8392857142857 258 49 91 5 1 255 1654470 1654215 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 17035 172 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
9489250 9489250 PRJNA576995_P_NODE_42548_length_242_cov_0.911243_g41956_i0 PRJNA576995 42548 242 0.911243 2.20520806 Planctomycetota bacterium 2026780 Bacteria Bacteria 270 5.53e-68   NTclustered gi|1850852299|gb|CP053450.1| 2026780 g41956 i0 87.342 104 237 28 97 2 1 235 719719 719955 MAG: Planctomycetota bacterium isolate PNC22 chromosome blastn 25168 270 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
18412722 18412722 PRJNA576995_P_NODE_33175_length_260_cov_1.278075_g32583_i0 PRJNA576995 33175 260 1.278075 3.322995 Lacunisphaera limnophila 1838286 Bacteria Bacteria 56.5 0.002   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g32583 i0 97.059 0.130769230769231 34 0 13 1 193 226 760791 760823 Lacunisphaera limnophila strain IG16b, complete genome blastn 34 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
23513155 23513155 PRJNA576995_P_NODE_34799_length_251_cov_0.865169_g34207_i0 PRJNA576995 34799 251 0.865169 2.17157419 Tepidisphaeraceae bacterium 2876886 Bacteria Bacteria 337 5.609999999999998e-88   NTclustered gi|2874253799|emb|OY969783.1| 2876886 g34207 i0 91.27 7.0398406374502 252 15 99 6 1 249 2503098 2502851 MAG: Tepidisphaeraceae bacterium isolate MFD04580.bin.c.1 genome assembly, chromosome: 1 blastn 1767 337 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae   Tepidisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;