RNAquarium Metadata Server
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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA576995" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA576995 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3111732 3111732 PRJNA576995_P_NODE_39323_length_246_cov_0.890173_g38731_i0 PRJNA576995 39323 246 0.890173 2.18982558 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 383 6.94e-102   NTclustered gi|470418397|ref|XM_004337037.1| 1257118 g38731 i0 96.537 0.939024390243902 231 8 94 0 1 231 496 726 Acanthamoeba castellanii str. Neff inorganic diphosphatase (ACA1_215010), partial mRNA blastn 231 383 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4388252 4388252 PRJNA576995_P_NODE_32364_length_265_cov_1.291667_g31772_i0 PRJNA576995 32364 265 1.291667 3.42291755 uncultured Vannellidae 544561 Discosea other_Eukaryota 189 1.7699999999999996e-43   NTclustered gi|724028220|gb|KP099879.1| 544561 g31772 i0 80.15 87.2905660377358 267 42 99 9 1 263 554 813 Uncultured Vannellidae clone b29 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23132 189 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
4388292 4388292 PRJNA576995_P_NODE_34884_length_251_cov_0.865169_g34292_i0 PRJNA576995 34884 251 0.865169 2.17157419 Vannella sp. ACN1 1215628 Discosea other_Eukaryota 436 5.369999999999999e-118   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g34292 i0 98.008 95.3426294820717 251 5 100 0 1 251 733 983 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 23931 436 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
4965109 4965109 PRJNA576995_P_NODE_5344_length_699_cov_2.750799_g4784_i0 PRJNA576995 5344 699 2.750799 19.22808501 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 416 2.15e-111   NTclustered gi|501417103|gb|JX481317.1| 137621 g4784 i0 77.924 83.2989985693848 684 139 97 10 18 695 1280 603 Arcyria cinerea voucher AMFD433 elongation factor 1A (EF1A) gene, partial cds blastn 58226 416 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
5664392 5664392 PRJNA576995_P_NODE_27945_length_289_cov_1.069444_g27353_i0 PRJNA576995 27945 289 1.069444 3.09069316 Platyamoeba placida 3454475 Discosea other_Eukaryota 374 5.029999999999998e-99   NTclustered gi|33946348|gb|AY294153.1| 197527 g27353 i0 89.965 98.4636678200692 289 29 100 0 1 289 1127 839 Platyamoeba placida actin mRNA, partial cds blastn 28456 374 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
6938886 6938886 PRJNA576995_P_NODE_31926_length_268_cov_1.087179_g31334_i0 PRJNA576995 31926 268 1.087179 2.91363972 Cochliopodium spiniferum 313558 Discosea other_Eukaryota 257 4.84e-64   NTclustered gi|330902897|gb|JF298273.1| 313558 g31334 i0 83.955 95.0373134328358 268 43 100 0 1 268 370 103 Cochliopodium spiniferum clone 5102 actin gene, partial cds blastn 25470 257 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium spiniferum
9489191 9489191 PRJNA576995_P_NODE_36328_length_250_cov_0.813559_g35736_i0 PRJNA576995 36328 250 0.813559 2.0338975 Mastigella erinacea 1580587 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|730326714|gb|KJ879569.1| 1580587 g35736 i0 96.875 0.256 32 0 13 1 219 250 709 739 Mastigella erinacea strain LARNAKA2N clone 6 actin gene, partial cds blastn 64 52.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida   Mastigella Mastigella erinacea
10765017 10765017 PRJNA576995_P_NODE_31189_length_272_cov_1.030151_g30597_i0 PRJNA576995 31189 272 1.030151 2.80201072 Dictyostelium purpureum 5786 Evosea other_Eukaryota 147 1.11e-30   NTclustered gi|330842692|ref|XM_003293259.1| 5786 g30597 i0 80 10.375 205 36 74 4 52 252 1970 1767 Dictyostelium purpureum elongation factor 2 (DICPUDRAFT_58424), mRNA blastn 2822 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11340215 11340215 PRJNA576995_P_NODE_27069_length_293_cov_1.400000_g26477_i0 PRJNA576995 27069 293 1.4 4.102 Vexillifera 218659 Root_unresolved Root_unresolved 542 1.32e-149   NTclustered gi|221185864|gb|FJ577811.1| 590481 g26477 i0 100 50.0068259385665 293 0 100 0 1 293 1266 1558 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 14652 542 1 Eukaryota Amoebozoa             uncultured Amoebozoa
17714912 17714912 PRJNA576995_P_NODE_37634_length_248_cov_0.880000_g37042_i0 PRJNA576995 37634 248 0.88 2.1824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.002   NTclustered gi|76563896|tpd|BR000215.1| 44689 g37042 i0 100 1.33064516129032 30 0 12 0 17 46 308 279 TPA_exp: Dictyostelium discoideum recA gene for RecA, complete cds blastn 330 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
22237564 22237564 PRJNA576995_P_NODE_17118_length_362_cov_1.910035_g16526_i0 PRJNA576995 17118 362 1.910035 6.9143267 Platyamoeba placida 3454475 Discosea other_Eukaryota 466 1.03e-126   NTclustered gi|33946348|gb|AY294153.1| 197527 g16526 i0 90.196 100.127071823204 357 35 99 0 6 362 556 912 Platyamoeba placida actin mRNA, partial cds blastn 36246 466 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
22237876 22237876 PRJNA576995_P_NODE_35818_length_250_cov_0.870056_g35226_i0 PRJNA576995 35818 250 0.870056 2.17514 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 449 6.87e-122   NTclustered gi|221185864|gb|FJ577811.1| 590481 g35226 i0 99.2 34.988 250 1 100 1 1 250 494 742 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 8747 449 1 Eukaryota Amoebozoa             uncultured Amoebozoa
22237939 22237939 PRJNA576995_P_NODE_41758_length_243_cov_0.905882_g41166_i0 PRJNA576995 41758 243 0.905882 2.20129326 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 143 1.2599999999999998e-29   NTclustered gi|470373752|ref|XM_004332996.1| 1257118 g41166 i0 77.551 2.09876543209877 245 49 99 6 1 242 627 386 Acanthamoeba castellanii str. Neff ribosomal protein S5, putative (ACA1_048210), partial mRNA blastn 510 143 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;