RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA575566" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA575566 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3110928 3110928 PRJNA575566_P_NODE_19483_length_238_cov_1.186441_g19286_i0 PRJNA575566 19483 238 1.186441 2.82372958 Pristionchus sp. 14 RS5230 452808 Nematoda Nematoda 93.5 1.26e-14   NTclustered gi|150982145|gb|EF634661.1| 452808 g19286 i0 91.304 20.2016806722689 69 4 29 2 85 152 391 324 Pristionchus sp. 14 RS5230 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 4808 93.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 14 RS5230
23512289 23512289 PRJNA575566_P_NODE_14919_length_273_cov_1.155660_g14722_i0 PRJNA575566 14919 273 1.15566 3.1549518 Strongyloides ratti 34506 Nematoda Nematoda 169 2.3899999999999997e-37   NTclustered gi|1376143463|ref|XM_024652111.1| 34506 g14722 i0 83.708 4.07692307692308 178 29 65 0 1 178 138 315 Strongyloides ratti Histone H2A domain and Histone core domain and Histone-fold domain-containing protein (SRAE_2000118900), partial mRNA blastn 1113 169 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;