RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA575566" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA575566 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
560210 560210 PRJNA575566_P_NODE_28321_length_203_cov_0.901408_g28124_i0 PRJNA575566 28321 203 0.901408 1.82985824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 259 9.71e-65   NTclustered gi|470416357|ref|XM_004336829.1| 1257118 g28124 i0 90 97.7783251231527 200 20 99 0 2 201 560 361 Acanthamoeba castellanii str. Neff fumarate hydratase, class II, putative (ACA1_130590), partial mRNA blastn 19849 259 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6240436 6240436 PRJNA575566_P_NODE_9565_length_338_cov_0.924188_g9368_i0 PRJNA575566 9565 338 0.924188 3.12375544 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 211 4.97e-50   NTclustered gi|1805599632|gb|MN129744.1| 5756 g9368 i0 78.55 77.6183431952663 331 63 97 7 2 328 229 555 Acanthamoeba sp. strain PSH NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial blastn 26235 213 0.990610328638498 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
6938411 6938411 PRJNA575566_P_NODE_9186_length_344_cov_4.890459_g8989_i0 PRJNA575566 9186 344 4.890459 16.82317896 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 542 1.58e-149   NTclustered gi|330902845|gb|JF298249.1| 703021 g8989 i0 95.362 79.4970930232558 345 8 100 5 1 344 816 1153 Cochliopodium actinophorum clone 1202 18S ribosomal RNA gene, partial sequence blastn 27347 542 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
13314161 13314161 PRJNA575566_P_NODE_2931_length_604_cov_16.416206_g2736_i0 PRJNA575566 2931 604 16.416206 99.15388424 Cochliopodium minus 313997 Discosea other_Eukaryota 462 2.33e-125   NTclustered gi|330902862|gb|JF298257.1| 313997 g2736 i0 99.605 38.4834437086093 253 1 82 0 1 253 504 252 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 23244 462 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
18412153 18412153 PRJNA575566_P_NODE_4075_length_518_cov_2.757112_g3878_i0 PRJNA575566 4075 518 2.757112 14.28184016 Balamuthia mandrillaris 66527 Discosea other_Eukaryota 276 2.7699999999999997e-69   NTclustered gi|918020693|ref|NC_027736.1| 66527 g3878 i0 84.083 54.7683397683398 289 42 55 4 148 432 37325 37037 Balamuthia mandrillaris strain BeN mitochondrion, complete genome blastn 28370 276 1 Eukaryota Amoebozoa   Discosea   Longamoebia Balamuthiidae Balamuthia Balamuthia mandrillaris
22237269 22237269 PRJNA575566_P_NODE_4838_length_475_cov_2.707729_g4641_i0 PRJNA575566 4838 475 2.707729 12.86171275 Cochliopodium marrii 2652063 Discosea other_Eukaryota 634 3.609999999999999e-177   NTclustered gi|1758131109|gb|MN389530.1| 2652063 g4641 i0 96.134 61.7284210526316 388 15 82 0 1 388 388 1 Cochliopodium marrii isolate 1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 29321 634 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium marrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;