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contig_metadata

22 rows where analysis = "blastn", bioproject = "PRJNA575566" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA575566 · 22 ✖

analysis 1

  • blastn · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1136743 1136743 PRJNA575566_P_NODE_22241_length_220_cov_1.610063_g22044_i0 PRJNA575566 22241 220 1.610063 3.5421386 Hemiscylliidae 40580 Chordata Chordata 52.8 0.019   NTclustered gi|2096747322|ref|XM_043721243.1| 36176 g22044 i0 87.5 0.872727272727273 48 3 21 3 4 50 1195 1240 PREDICTED: Chiloscyllium plagiosum serine/threonine kinase 11 (stk11), transcript variant X2, mRNA blastn 192 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
1835597 1835597 PRJNA575566_P_NODE_29402_length_202_cov_0.907801_g29205_i0 PRJNA575566 29402 202 0.907801 1.83375802 Fringilla coelebs 37598 Chordata Chordata 52.8 0.018   NTclustered gi|2917613052|emb|OZ228692.1| 37598 g29205 i0 100 0.138613861386139 28 0 14 0 163 190 3186393 3186366 Fringilla coelebs genome assembly, chromosome: 5 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
3110833 3110833 PRJNA575566_P_NODE_13643_length_285_cov_0.785714_g13446_i0 PRJNA575566 13643 285 0.785714 2.2392849 Mus musculus 10090 Chordata Chordata 52.8 0.026   NTclustered gi|79759653|gb|AC166114.5| 10090 g13446 i0 100 0.196491228070175 28 0 10 0 256 283 76439 76466 Mus musculus BAC clone RP23-63J20 from chromosome 16, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
3111113 3111113 PRJNA575566_P_NODE_5043_length_466_cov_2.034568_g4846_i0 PRJNA575566 5043 466 2.034568 9.48108688 Dromiciops gliroides 33562 Chordata Chordata 100 1.59e-16   NTclustered gi|2102696398|ref|XM_043992798.1| 33562 g4846 i0 90.667 9.60729613733906 75 7 16 0 109 183 489 415 PREDICTED: Dromiciops gliroides ribulose-5-phosphate-3-epimerase (RPE), transcript variant X3, mRNA blastn 4477 100 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Microbiotheria Microbiotheriidae Dromiciops Dromiciops gliroides
6938076 6938076 PRJNA575566_P_NODE_15986_length_264_cov_0.945813_g15789_i0 PRJNA575566 15986 264 0.945813 2.49694632 Mus musculus 10090 Chordata Chordata 62.1 4.01e-5   NTclustered gi|78190186|gb|AC166158.3| 10090 g15789 i0 94.872 17.1590909090909 39 2 15 0 22 60 46984 47022 Mus musculus BAC clone RP24-244P14 from chromosome 1, complete sequence blastn 4530 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6938078 6938078 PRJNA575566_P_NODE_16226_length_262_cov_1.273632_g16029_i0 PRJNA575566 16226 262 1.273632 3.33691584 Mus musculus 10090 Chordata Chordata 52.8 0.024   NTclustered gi|84782041|gb|AC099719.9| 10090 g16029 i0 100 0.33206106870229 28 0 11 0 19 46 91683 91656 Mus musculus chromosome 7, clone RP23-394F19, complete sequence blastn 87 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6938295 6938295 PRJNA575566_P_NODE_29426_length_202_cov_0.907801_g29229_i0 PRJNA575566 29426 202 0.907801 1.83375802 Lathamus discolor 678569 Chordata Chordata 119 1.71e-22   NTclustered gi|2740773566|ref|XM_065664458.1| 678569 g29229 i0 78.646 14.6683168316832 192 31 93 8 1 187 1538 1724 PREDICTED: Lathamus discolor V-type proton ATPase catalytic subunit A-like (LOC136006441), mRNA blastn 2963 119 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Lathamus Lathamus discolor
7514623 7514623 PRJNA575566_P_NODE_29346_length_202_cov_0.907801_g29149_i0 PRJNA575566 29346 202 0.907801 1.83375802 Suidae 9821 Chordata Chordata 56.5 0.001   NTclustered gi|545800890|ref|XM_005659664.1| 9823 g29149 i0 100 1.76732673267327 30 0 15 0 138 167 1605 1634 PREDICTED: Sus scrofa cation channel sperm associated 2 (CATSPER2), transcript variant X3, mRNA blastn 357 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
8789479 8789479 PRJNA575566_P_NODE_10367_length_325_cov_1.257576_g10170_i0 PRJNA575566 10367 325 1.257576 4.087122 Metazoa 33208 Chordata Chordata 58.4 6.56e-4   NTclustered gi|51870923|gb|AC147639.3| 10090 g10170 i0 100 15.7323076923077 31 0 10 0 30 60 50476 50446 Mus musculus BAC clone RP23-115M6 from 13, complete sequence blastn 5113 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10764191 10764191 PRJNA575566_P_NODE_13769_length_283_cov_2.594595_g13572_i0 PRJNA575566 13769 283 2.594595 7.34270385 Lampetra fluviatilis 7748 Chordata Chordata 52.8 0.026   NTclustered gi|2805734110|emb|OZ078424.1| 7748 g13572 i0 96.875 0.113074204946996 32 0 11 1 181 211 63196 63165 Lampetra fluviatilis genome assembly, chromosome: 21 blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
10764404 10764404 PRJNA575566_P_NODE_27669_length_204_cov_0.895105_g27472_i0 PRJNA575566 27669 204 0.895105 1.8260142 Mus musculus 10090 Chordata Chordata 60.2 1.06e-4   NTclustered gi|34366487|emb|AL807744.7| 10090 g27472 i0 100 0.156862745098039 32 0 16 0 172 203 78339 78370 Mouse DNA sequence from clone RP23-174C4 on chromosome X, complete sequence blastn 32 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
12615708 12615708 PRJNA575566_P_NODE_22470_length_219_cov_1.215190_g22273_i0 PRJNA575566 22470 219 1.21519 2.6612661 Chordata 7711 Chordata Chordata 54.7 0.005   NTclustered gi|2721460845|emb|HG999683.4| 9103 g22273 i0 100 1.29223744292237 29 0 13 0 18 46 72722142 72722114 Meleagris gallopavo genome assembly, chromosome: Z blastn 283 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
13314071 13314071 PRJNA575566_P_NODE_23971_length_209_cov_1.729730_g23774_i0 PRJNA575566 23971 209 1.72973 3.6151357 Mus musculus 10090 Chordata Chordata 52.8 0.018   NTclustered gi|66793511|gb|AC158805.4| 10090 g23774 i0 96.774 0.148325358851675 31 1 15 0 127 157 39034 39004 Mus musculus 10 BAC RP24-222M1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15164977 15164977 PRJNA575566_P_NODE_9372_length_341_cov_1.807143_g9175_i0 PRJNA575566 9372 341 1.807143 6.16235763 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 1.87e-24   NTclustered gi|6175639|gb|AF158726.1|AF158726 34764 g9175 i0 86.842 20.8211143695015 114 14 33 1 210 323 2660 2772 Oikopleura sp. internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 7100 126 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura sp.
15862657 15862657 PRJNA575566_P_NODE_17213_length_254_cov_1.326425_g17016_i0 PRJNA575566 17213 254 1.326425 3.3691195 Haemorhous mexicanus 30427 Chordata Chordata 63.9 1.07e-5   NTclustered gi|2586350821|ref|XM_059852382.1| 30427 g17016 i0 86.207 13.6141732283465 58 8 23 0 60 117 1868 1925 PREDICTED: Haemorhous mexicanus bromodomain adjacent to zinc finger domain 2B (BAZ2B), transcript variant X14, mRNA blastn 3458 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Haemorhous Haemorhous mexicanus
17714640 17714640 PRJNA575566_P_NODE_19994_length_234_cov_2.219653_g19797_i0 PRJNA575566 19994 234 2.219653 5.19398802 Metazoa 33208 Chordata Chordata 67.6 7.48e-7   NTclustered gi|354788691|gb|JN953192.1| 10090 g19797 i0 89.091 20.465811965812 55 4 23 2 129 182 28329 28382 Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Myo15:tm1a(EUCOMM)Wtsi; transgenic blastn 4789 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
19686476 19686476 PRJNA575566_P_NODE_16896_length_257_cov_0.979592_g16699_i0 PRJNA575566 16896 257 0.979592 2.51755144 Polypterus senegalus 55291 Chordata Chordata 313 9.71e-81   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g16699 i0 89.286 16.9610894941634 252 24 97 3 8 257 1173 1423 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 4359 313 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
22236956 22236956 PRJNA575566_P_NODE_12398_length_298_cov_1.345992_g12201_i0 PRJNA575566 12398 298 1.345992 4.01105616 Carcharodon carcharias 13397 Chordata Chordata 54.7 0.008   NTclustered gi|2031757845|ref|XM_041188262.1| 13397 g12201 i0 96.875 0.322147651006711 32 1 11 0 166 197 2126 2095 PREDICTED: Carcharodon carcharias general transcription factor IIIC, polypeptide 2, beta (gtf3c2), transcript variant X3, mRNA blastn 96 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias
22237136 22237136 PRJNA575566_P_NODE_2378_length_670_cov_1.761905_g2191_i0 PRJNA575566 2378 670 1.761905 11.8047635 Loxodonta africana 9785 Chordata Chordata 54.7 0.019   NTclustered gi|2710959655|ref|XR_010321073.1| 9785 g2191 i0 100 0.0432835820895522 29 0 4 0 180 208 1477 1449 PREDICTED: Loxodonta africana uncharacterized LOC135230397 (LOC135230397), ncRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana
23512244 23512244 PRJNA575566_P_NODE_12319_length_299_cov_1.075630_g12122_i0 PRJNA575566 12319 299 1.07563 3.2161337 Pelobates fuscus 191477 Chordata Chordata 52.8 0.028   NTclustered gi|2688539772|ref|XM_063451694.1| 191477 g12122 i0 100 0.187290969899666 28 0 9 0 5 32 1823 1850 PREDICTED: Pelobates fuscus RNA binding motif protein 24 (RBM24), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates fuscus
23512422 23512422 PRJNA575566_P_NODE_22759_length_217_cov_1.230769_g22562_i0 PRJNA575566 22759 217 1.230769 2.67076873 Colius striatus 57412 Chordata Chordata 52.8 0.019   NTclustered gi|2643749609|ref|XM_062003069.1| 57412 g22562 i0 100 0.258064516129032 28 0 13 0 55 82 8784 8811 PREDICTED: Colius striatus PMS1 homolog 1, mismatch repair system component (PMS1), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Coliiformes Coliidae Colius Colius striatus
24786270 24786270 PRJNA575566_P_NODE_23380_length_213_cov_1.565789_g23183_i0 PRJNA575566 23380 213 1.565789 3.33513057 Canis lupus 9612 Chordata Chordata 52.8 0.019   NTclustered gi|161760804|gb|AC208498.3| 9615 g23183 i0 100 0.131455399061033 28 0 13 0 77 104 29195 29222 Canis familiaris, clone XX-1807O15, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;