RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA575566" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA575566 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4387679 4387679 PRJNA575566_P_NODE_5324_length_454_cov_1.862595_g5127_i0 PRJNA575566 5324 454 1.862595 8.4561813 Skeletonema menzelii 216823 SAR_Eukaryotes SAR_Eukaryotes 172 3.24e-38   NTclustered gi|2739942921|dbj|LC814781.1| 216823 g5127 i0 82.381 39.057268722467 210 26 44 10 255 454 32430 32222 Skeletonema menzelii NIES-2842 mitochondrial DNA, complete genome blastn 17732 172 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema menzelii
8212964 8212964 PRJNA575566_P_NODE_11307_length_311_cov_2.288000_g11110_i0 PRJNA575566 11307 311 2.288 7.11568 Psammoneis japonica 517775 SAR_Eukaryotes SAR_Eukaryotes 130 1.31e-25   NTclustered gi|1418586704|ref|NC_037989.1| 517775 g11110 i0 87.5 0.360128617363344 112 14 36 0 197 308 24361 24472 Psammoneis japonica mitochondrion, complete genome blastn 112 130 1 Eukaryota Sar   Bacillariophyta Mediophyceae Triceratiales Plagiogrammaceae Psammoneis Psammoneis japonica
12039176 12039176 PRJNA575566_P_NODE_23750_length_211_cov_1.280000_g23553_i0 PRJNA575566 23750 211 1.28 2.7008 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 180 8.15e-41   NTclustered gi|657012367|gb|KF302531.1| 2850 g23553 i0 83.938 23.4644549763033 193 25 90 6 22 211 16 205 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 4951 180 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;