RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA575566" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA575566 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8213096 8213096 PRJNA575566_P_NODE_17667_length_251_cov_1.010526_g17470_i0 PRJNA575566 17667 251 1.010526 2.53642026 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 215 2.74e-51   NTclustered gi|635557420|emb|FN984965.1| 37502 g17470 i0 82.213 29.8924302788845 253 41 100 4 1 251 1325 1075 Polytomella sp. Pringsheim 198.80 mRNA for S-Adenosyl homocysteine hydrolase (sah1 gene) blastn 7503 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
11340014 11340014 PRJNA575566_P_NODE_26569_length_206_cov_0.882759_g26372_i0 PRJNA575566 26569 206 0.882759 1.81848354 Eukaryota 2759 Plants Plants 381 2.0199999999999994e-101   NTclustered gi|1714003650|gb|MN243923.1| 3079 g26372 i0 100 99.6019417475728 206 0 100 0 1 206 771 566 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 20518 381 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
15862813 15862813 PRJNA575566_P_NODE_27253_length_205_cov_0.888889_g27056_i0 PRJNA575566 27253 205 0.888889 1.82222245 Chlamydomonas sp. ICE-L 309537 Plants Plants 135 1.7300000000000003e-27   NTclustered gi|1433048021|gb|MF780877.1| 309537 g27056 i0 79 85.0048780487805 200 40 97 2 1 199 1107 1305 Chlamydomonas sp. ICE-L heat shock protein 70A (HSP70A) mRNA, partial cds blastn 17426 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. ICE-L
19686433 19686433 PRJNA575566_P_NODE_13736_length_284_cov_1.062780_g13539_i0 PRJNA575566 13736 284 1.06278 3.0182952 Dicloster acuatus 91190 Plants Plants 172 1.93e-38   NTclustered gi|2724824305|gb|PP746556.1| 91190 g13539 i0 80.717 52.9014084507042 223 41 78 2 57 278 41874 41653 Dicloster acuatus culture SAG:41.98 mitochondrion, complete genome blastn 15024 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
24786406 24786406 PRJNA575566_P_NODE_4320_length_503_cov_2.000000_g4123_i0 PRJNA575566 4320 503 2 10.06 Chlamydomonas reinhardtii 3055 Plants Plants 366 1.5499999999999995e-96   NTclustered gi|224593220|gb|FJ715708.1| 3055 g4123 i0 83.212 40.7574552683897 411 57 81 9 44 448 6 410 Chlamydomonas reinhardtii strain CC1690 translation elongation factor-like protein mRNA, partial cds blastn 20501 366 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;