RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA573544" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA573544 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5663132 5663132 PRJNA573544_P_NODE_4745_length_266_cov_1.279793_g4727_i0 PRJNA573544 4745 266 1.279793 3.40424938 Bodomorpha sp. HFCC 92 458884 SAR_Eukaryotes SAR_Eukaryotes 372 1.64e-98   NTclustered gi|197723521|gb|EF681900.2| 458884 g4727 i0 99.034 99.4022556390977 207 2 78 0 59 265 1 207 Bodomorpha sp. HFCC 92 28S ribosomal RNA gene, partial sequence blastn 26441 372 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha sp. HFCC 92
9487833 9487833 PRJNA573544_P_NODE_8168_length_242_cov_0.923077_g8150_i0 PRJNA573544 8168 242 0.923077 2.23384634 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 233 7.25e-57   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g8150 i0 84.426 29.2933884297521 244 31 100 6 1 242 3756 3994 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 7089 233 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;