RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA573544" and tax_kingdom = "Bacillati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 7 ✖

bioproject 1

  • PRJNA573544 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3110295 3110295 PRJNA573544_P_NODE_4463_length_274_cov_1.363184_g4445_i0 PRJNA573544 4463 274 1.363184 3.73512416 Microbacterium sp. BH-3-3-3 1906742 Bacteria Bacteria 261 3.84e-65   NTclustered gi|1084379694|gb|CP017674.1| 1906742 g4445 i0 84.47 2.95255474452555 264 41 96 0 1 264 2478463 2478726 Microbacterium sp. BH-3-3-3 chromosome, complete genome blastn 809 261 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. BH-3-3-3
5663185 5663185 PRJNA573544_P_NODE_7125_length_246_cov_0.901734_g7107_i0 PRJNA573544 7125 246 0.901734 2.21826564 Mycobacterium sp. ITM-2016-00316 2099695 Bacteria Bacteria 411 3.1799999999999995e-110   NTclustered gi|2579898707|gb|CP134398.1| 2099695 g7107 i0 96.748 46.6707317073171 246 8 100 0 1 246 4955786 4955541 Mycobacterium sp. ITM-2016-00316 chromosome blastn 11481 411 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. ITM-2016-00316
8789005 8789005 PRJNA573544_P_NODE_4027_length_286_cov_1.821596_g4009_i0 PRJNA573544 4027 286 1.821596 5.20976456 root 1 Root_unresolved Root_unresolved 512 1.01e-140   NTclustered gi|2660106423|gb|CP138905.1| 1831 g4009 i0 98.955 422.493006993007 287 2 100 1 1 286 561613 561327 MAG: Rhodococcus sp. (in: high G+C Gram-positive bacteria) isolate 1088c chromosome blastn 120833 512 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. (in: high G+C Gram-positive bacteria)
13890139 13890139 PRJNA573544_P_NODE_2331_length_354_cov_1.110320_g2313_i0 PRJNA573544 2331 354 1.11032 3.9305328 Enterococcus 1350 Bacteria Bacteria 654 0   NTclustered gi|939198273|gb|CP010060.1| 44008 g2313 i0 100 484.629943502825 354 0 100 0 1 354 141236 140883 Enterococcus cecorum strain SA1 genome blastn 171559 654 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus cecorum
18411294 18411294 PRJNA573544_P_NODE_3775_length_294_cov_1.565611_g3757_i0 PRJNA573544 3775 294 1.565611 4.60289634 Microbacterium testaceum 2033 Bacteria Bacteria 200 9.2e-47   NTclustered gi|2488004109|gb|CP121699.1| 2033 g3757 i0 90.667 3.06462585034014 150 14 51 0 145 294 1093696 1093547 Microbacterium testaceum strain HW4 chromosome, complete genome blastn 901 200 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium testaceum
21538065 21538065 PRJNA573544_P_NODE_357_length_732_cov_2.062215_g341_i0 PRJNA573544 357 732 2.062215 15.0954138 Rhodococcus 1827 Bacteria Bacteria 1341 0   NTclustered gi|2660106423|gb|CP138905.1| 1831 g341 i0 99.727 413.687158469945 732 2 100 0 1 732 559870 560601 MAG: Rhodococcus sp. (in: high G+C Gram-positive bacteria) isolate 1088c chromosome blastn 302819 1347 0.99554565701559 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. (in: high G+C Gram-positive bacteria)
22813363 22813363 PRJNA573544_P_NODE_7378_length_245_cov_0.906977_g7360_i0 PRJNA573544 7378 245 0.906977 2.22209365 Mycobacteriales 85007 Bacteria Bacteria 318 1.9699999999999998e-82   NTclustered gi|2658946156|gb|CP108021.1| 1603258 g7360 i0 90.795 253.542857142857 239 21 98 1 7 245 2421 2184 Williamsia herbipolensis strain NBC_00319 chromosome, complete genome blastn 62118 320 0.99375 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia herbipolensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;