RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA573544" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 1 ✖

bioproject 1

  • PRJNA573544 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2411563 2411563 PRJNA573544_P_NODE_5682_length_252_cov_0.871508_g5664_i0 PRJNA573544 5682 252 0.871508 2.19620016 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 1.3299999999999999e-24   NTclustered gi|2794868929|ref|XM_067917821.1| 135588 g5664 i0 79.769 35.3650793650794 173 35 69 0 71 243 88 260 Histomonas meleagridis Histone H2A (GO595_004665), partial mRNA blastn 8912 126 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;