RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA572587 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5662591 5662591 PRJNA572587_P_NODE_22485_length_238_cov_9.010582_g22157_i0 PRJNA572587 22485 238 9.010582 21.44518516 Candidatus Electrothrix communis 1859133 Bacteria Bacteria 67.6 7.63e-7   NTclustered gi|2557726799|gb|CP130629.1| 1859133 g22157 i0 86.154 7.24789915966387 65 6 33 3 110 172 3961587 3961524 MAG: Candidatus Electrothrix communis isolate RB chromosome, complete genome blastn 1725 67.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Candidatus Electrothrix Candidatus Electrothrix communis
12037799 12037799 PRJNA572587_P_NODE_18110_length_267_cov_18.339450_g17782_i0 PRJNA572587 18110 267 18.33945 48.9663315 Desulfuromonas soudanensis 1603606 Bacteria Bacteria 219 2.2799999999999993e-52   NTclustered gi|924528553|gb|CP010802.1| 1603606 g17782 i0 85.202 671.516853932584 223 22 81 9 30 244 2966392 2966611 Desulfuromonas soudanensis strain WTL chromosome, complete genome blastn 179295 219 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas soudanensis
12614990 12614990 PRJNA572587_P_NODE_3050_length_750_cov_16.838802_g2793_i0 PRJNA572587 3050 750 16.838802 126.291015 root 1 Root_unresolved Root_unresolved 56.5 0.006   NTclustered gi|998152336|gb|CP014206.1| 1716143 g2793 i0 100 0.118666666666667 30 0 4 0 417 446 324994 325023 Pseudodesulfovibrio indicus strain J2 chromosome, complete genome blastn 89 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio indicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;