contig_metadata
12 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_phylum = "Spirochaetota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3687424 | 3687424 | PRJNA572587_P_NODE_4963_length_570_cov_61.527831_g4649_i0 | PRJNA572587 | 4963 | 570 | 61.527831 | 350.7086367 | Treponema | 157 | Bacteria | Bacteria | 556 | 9.77e-154 | NTclustered | gi|2265172126|gb|CP051522.1| | 158 | g4649 | i0 | 85.478 | 188.056140350877 | 544 | 68 | 95 | 10 | 24 | 564 | 1283793 | 1284328 | Treponema denticola strain OMZ 910 chromosome, complete genome | blastn | 107192 | 556 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 4964079 | 4964079 | PRJNA572587_P_NODE_30684_length_200_cov_21.132450_g30356_i0 | PRJNA572587 | 30684 | 200 | 21.13245 | 42.2649 | Treponema | 157 | Bacteria | Bacteria | 320 | 4.31e-83 | NTclustered | gi|2277017610|gb|CP038804.1| | 221027 | g30356 | i0 | 97.838 | 121.5 | 185 | 4 | 93 | 0 | 16 | 200 | 2088151 | 2087967 | Treponema putidum strain OMZ 835 chromosome, complete genome | blastn | 24300 | 320 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema putidum | ||
| 6239507 | 6239507 | PRJNA572587_P_NODE_24005_length_229_cov_81.088889_g23677_i0 | PRJNA572587 | 24005 | 229 | 81.088889 | 185.69355581 | Treponema | 157 | Bacteria | Bacteria | 292 | 1.11e-74 | NTclustered | gi|1996296230|gb|CP031393.1| | 58231 | g23677 | i0 | 93.069 | 189.270742358079 | 202 | 11 | 87 | 3 | 21 | 220 | 1012726 | 1012926 | Treponema medium strain ATCC 700293 chromosome, complete genome | blastn | 43343 | 292 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 6936858 | 6936858 | PRJNA572587_P_NODE_18106_length_267_cov_19.701835_g17778_i0 | PRJNA572587 | 18106 | 267 | 19.701835 | 52.60389945 | Treponema medium | 58231 | Bacteria | Bacteria | 416 | 7.519999999999998e-112 | NTclustered | gi|1996291085|gb|CP027017.1| | 58231 | g17778 | i0 | 97.531 | 177.228464419476 | 243 | 6 | 91 | 0 | 3 | 245 | 1014394 | 1014152 | Treponema medium strain T19 chromosome, complete genome | blastn | 47320 | 416 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 9487166 | 9487166 | PRJNA572587_P_NODE_19688_length_255_cov_135.966019_g19360_i0 | PRJNA572587 | 19688 | 255 | 135.966019 | 346.71334845 | Treponema medium | 58231 | Bacteria | Bacteria | 237 | 5.96e-58 | NTclustered | gi|1996296230|gb|CP031393.1| | 58231 | g19360 | i0 | 85.776 | 80.9803921568627 | 232 | 23 | 89 | 8 | 5 | 232 | 1012926 | 1012701 | Treponema medium strain ATCC 700293 chromosome, complete genome | blastn | 20650 | 237 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 12037954 | 12037954 | PRJNA572587_P_NODE_26450_length_217_cov_20.672619_g26122_i0 | PRJNA572587 | 26450 | 217 | 20.672619 | 44.85958323 | Treponema medium | 58231 | Bacteria | Bacteria | 206 | 1.3899999999999998e-48 | NTclustered | gi|1996296230|gb|CP031393.1| | 58231 | g26122 | i0 | 90.385 | 3.32258064516129 | 156 | 15 | 72 | 0 | 24 | 179 | 2636970 | 2636815 | Treponema medium strain ATCC 700293 chromosome, complete genome | blastn | 721 | 206 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 14587596 | 14587596 | PRJNA572587_P_NODE_20712_length_248_cov_20.894472_g20384_i0 | PRJNA572587 | 20712 | 248 | 20.894472 | 51.81829056 | Treponema vincentii | 69710 | Bacteria | Bacteria | 363 | 9.119999999999997e-96 | NTclustered | gi|1807378492|gb|CP048020.1| | 69710 | g20384 | i0 | 96.38 | 12.3548387096774 | 221 | 7 | 89 | 1 | 6 | 226 | 792517 | 792298 | Treponema vincentii strain OMZ 804 chromosome, complete genome | blastn | 3064 | 363 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 15861846 | 15861846 | PRJNA572587_P_NODE_7053_length_461_cov_15.031553_g6729_i0 | PRJNA572587 | 7053 | 461 | 15.031553 | 69.29545933 | Treponema denticola | 158 | Bacteria | Bacteria | 667 | 0 | NTclustered | gi|2265172126|gb|CP051522.1| | 158 | g6729 | i0 | 95.673 | 15.9132321041215 | 416 | 17 | 90 | 1 | 23 | 437 | 1148700 | 1148285 | Treponema denticola strain OMZ 910 chromosome, complete genome | blastn | 7336 | 667 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 16438571 | 16438571 | PRJNA572587_P_NODE_18933_length_261_cov_20.150943_g18605_i0 | PRJNA572587 | 18933 | 261 | 20.150943 | 52.59396123 | Treponema | 157 | Bacteria | Bacteria | 285 | 2.16e-72 | NTclustered | gi|470488561|ref|NR_076878.1| | 81028 | g18605 | i0 | 88.793 | 129.210727969349 | 232 | 26 | 89 | 0 | 1 | 232 | 543 | 312 | Treponema brennaborense strain DD5/3 23S ribosomal RNA gene, complete sequence | blastn | 33724 | 285 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema brennaborense | ||
| 18987292 | 18987292 | PRJNA572587_P_NODE_23235_length_234_cov_3.145946_g22907_i0 | PRJNA572587 | 23235 | 234 | 3.145946 | 7.36151364 | Treponema | 157 | Bacteria | Bacteria | 139 | 1.56e-28 | NTclustered | gi|470488561|ref|NR_076878.1| | 81028 | g22907 | i0 | 80.319 | 155.021367521368 | 188 | 34 | 79 | 3 | 2 | 187 | 219 | 33 | Treponema brennaborense strain DD5/3 23S ribosomal RNA gene, complete sequence | blastn | 36275 | 139 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema brennaborense | ||
| 24785424 | 24785424 | PRJNA572587_P_NODE_9140_length_397_cov_1.347701_g8813_i0 | PRJNA572587 | 9140 | 397 | 1.347701 | 5.35037297 | Treponema denticola | 158 | Bacteria | Bacteria | 671 | 0 | NTclustered | gi|2277007739|gb|CP038800.1| | 158 | g8813 | i0 | 98.936 | 4.02770780856423 | 376 | 3 | 95 | 1 | 22 | 397 | 631249 | 630875 | Treponema denticola strain ATCC 700768 chromosome, complete genome | blastn | 1599 | 671 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 25362354 | 25362354 | PRJNA572587_P_NODE_34120_length_189_cov_9.135714_g33792_i0 | PRJNA572587 | 34120 | 189 | 9.135714 | 17.26649946 | Treponema | 157 | Bacteria | Bacteria | 281 | 1.9e-71 | NTclustered | gi|2265193197|gb|CP058347.1| | 158 | g33792 | i0 | 97.006 | 111.089947089947 | 167 | 5 | 88 | 0 | 1 | 167 | 2223047 | 2223213 | Treponema denticola strain OKA3 chromosome, complete genome | blastn | 20996 | 281 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;