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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA572587 · 17 ✖

analysis 1

  • blastn · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
558981 558981 PRJNA572587_P_NODE_2961_length_761_cov_46.349719_g2709_i0 PRJNA572587 2961 761 46.349719 352.72136159 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.006   NTclustered gi|1557394408|emb|LR031564.1| 45931 g2709 i0 100 0.0394218134034166 30 0 4 0 732 761 54 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
6936731 6936731 PRJNA572587_P_NODE_11606_length_344_cov_13.938983_g11278_i0 PRJNA572587 11606 344 13.938983 47.95010152 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.033   NTclustered gi|1557394408|emb|LR031564.1| 45931 g11278 i0 100 0.0813953488372093 28 0 8 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8211789 8211789 PRJNA572587_P_NODE_19047_length_260_cov_28.597156_g18719_i0 PRJNA572587 19047 260 28.597156 74.3526056 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.024   NTclustered gi|1557394408|emb|LR031564.1| 45931 g18719 i0 100 0.107692307692308 28 0 11 0 231 258 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8212073 8212073 PRJNA572587_P_NODE_36407_length_182_cov_13.774436_g36079_i0 PRJNA572587 36407 182 13.774436 25.06947352 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.015   NTclustered gi|1557394408|emb|LR031564.1| 45931 g36079 i0 100 0.153846153846154 28 0 15 0 155 182 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
9487008 9487008 PRJNA572587_P_NODE_11388_length_348_cov_4.618729_g11061_i0 PRJNA572587 11388 348 4.618729 16.07317692 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.033   NTclustered gi|1557394408|emb|LR031564.1| 45931 g11061 i0 100 0.0804597701149425 28 0 8 0 321 348 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
10763205 10763205 PRJNA572587_P_NODE_25789_length_220_cov_27.473684_g25461_i0 PRJNA572587 25789 220 27.473684 60.4421048 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.005   NTclustered gi|1557394408|emb|LR031564.1| 45931 g25461 i0 100 0.131818181818182 29 0 13 0 192 220 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
10763500 10763500 PRJNA572587_P_NODE_7469_length_446_cov_18.357683_g7144_i0 PRJNA572587 7469 446 18.357683 81.87526618 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.043   NTclustered gi|1557394408|emb|LR031564.1| 45931 g7144 i0 100 0.062780269058296 28 0 6 0 11 38 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12038069 12038069 PRJNA572587_P_NODE_33470_length_191_cov_6.577465_g33142_i0 PRJNA572587 33470 191 6.577465 12.56295815 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g33142 i0 100 0.146596858638743 28 0 15 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12038117 12038117 PRJNA572587_P_NODE_37090_length_180_cov_28.862595_g36762_i0 PRJNA572587 37090 180 28.862595 51.952671 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.004   NTclustered gi|1557394408|emb|LR031564.1| 45931 g36762 i0 100 0.161111111111111 29 0 16 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13312840 13312840 PRJNA572587_P_NODE_25771_length_220_cov_44.467836_g25443_i0 PRJNA572587 25771 220 44.467836 97.8292392 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.019   NTclustered gi|1557394408|emb|LR031564.1| 45931 g25443 i0 100 0.127272727272727 28 0 13 0 183 210 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14587830 14587830 PRJNA572587_P_NODE_36072_length_183_cov_10.044776_g35744_i0 PRJNA572587 36072 183 10.044776 18.38194008 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.004   NTclustered gi|1557394408|emb|LR031564.1| 45931 g35744 i0 100 0.158469945355191 29 0 16 0 155 183 53 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
17136409 17136409 PRJNA572587_P_NODE_18054_length_267_cov_103.633028_g17726_i0 PRJNA572587 18054 267 103.633028 276.70018476 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.024   NTclustered gi|1557394408|emb|LR031564.1| 45931 g17726 i0 100 0.104868913857678 28 0 10 0 225 252 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18410634 18410634 PRJNA572587_P_NODE_16435_length_282_cov_16.905579_g16107_i0 PRJNA572587 16435 282 16.905579 47.67373278 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g16107 i0 100 0.099290780141844 28 0 10 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
20960844 20960844 PRJNA572587_P_NODE_14597_length_302_cov_7.786561_g14269_i0 PRJNA572587 14597 302 7.786561 23.51541422 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.008   NTclustered gi|1557394408|emb|LR031564.1| 45931 g14269 i0 100 0.0960264900662252 29 0 10 0 1 29 25 53 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23511130 23511130 PRJNA572587_P_NODE_18979_length_261_cov_4.844340_g18651_i0 PRJNA572587 18979 261 4.84434 12.6437274 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.024   NTclustered gi|1557394408|emb|LR031564.1| 45931 g18651 i0 100 0.10727969348659 28 0 11 0 234 261 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23511154 23511154 PRJNA572587_P_NODE_20379_length_250_cov_61.303483_g20051_i0 PRJNA572587 20379 250 61.303483 153.2587075 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g20051 i0 100 0.112 28 0 11 0 223 250 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
24784946 24784946 PRJNA572587_P_NODE_18800_length_262_cov_16.075117_g18472_i0 PRJNA572587 18800 262 16.075117 42.11680654 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.024   NTclustered gi|1557394408|emb|LR031564.1| 45931 g18472 i0 100 0.106870229007634 28 0 11 0 235 262 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;