RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA572587 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8211627 8211627 PRJNA572587_P_NODE_10527_length_364_cov_211.752381_g10200_i0 PRJNA572587 10527 364 211.752381 770.77866684 Aggregatilineales bacterium 2952883 Bacteria Bacteria 147 1.5399999999999998e-30   NTclustered gi|2621701642|emb|OY760398.1| 2952883 g10200 i0 76.412 41.5521978021978 301 54 80 16 38 328 381172 380879 MAG: Aggregatilineales bacterium isolate 948f1344-b363-40c2-9c6d-9b25e8b84bf3 genome assembly, chromosome: 1 blastn 15125 147 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales     Aggregatilineales bacterium
22235833 22235833 PRJNA572587_P_NODE_19598_length_256_cov_17.396135_g19270_i0 PRJNA572587 19598 256 17.396135 44.5341056 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 52.8 0.023   NTclustered gi|2874253981|emb|OY970306.1| 1672391 g19270 i0 81.967 0.23828125 61 11 24 0 171 231 1915447 1915507 MAG: uncultured Chloroflexia bacterium isolate MFD02134.bin.c.1 genome assembly, chromosome: 1 blastn 61 52.8 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;