RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA572587 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10064499 10064499 PRJNA572587_P_NODE_34428_length_188_cov_9.381295_g34100_i0 PRJNA572587 34428 188 9.381295 17.6368346 Peredibacter 263370 Bacteria Bacteria 254 4.12e-63   NTclustered gi|2631252187|gb|CP139487.1| 28202 g34100 i0 95.57 156.744680851064 158 7 84 0 31 188 512935 513092 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 29468 254 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
15861269 15861269 PRJNA572587_P_NODE_11773_length_341_cov_94.876712_g11445_i0 PRJNA572587 11773 341 94.876712 323.52958792 Peredibacter starrii 28202 Bacteria Bacteria 492 1.5999999999999996e-134   NTclustered gi|2631252187|gb|CP139487.1| 28202 g11445 i0 97.895 25.3049853372434 285 5 84 1 35 319 512499 512216 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 8629 492 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
24088003 24088003 PRJNA572587_P_NODE_5159_length_557_cov_135.421260_g4843_i0 PRJNA572587 5159 557 135.42126 754.2964182 Peredibacter 263370 Bacteria Bacteria 863 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g4843 i0 97.988 95.9228007181328 497 10 89 0 38 534 511180 510684 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 53429 869 0.993095512082854 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
24784989 24784989 PRJNA572587_P_NODE_21040_length_246_cov_15.918782_g20712_i0 PRJNA572587 21040 246 15.918782 39.16020372 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 311 3.32e-80   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g20712 i0 91.892 84.0569105691057 222 18 90 0 25 246 1292537 1292758 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 20678 311 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;