RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA572587 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1136083 1136083 PRJNA572587_P_NODE_9021_length_400_cov_13.330484_g8694_i0 PRJNA572587 9021 400 13.330484 53.321936 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 401 3.299999999999999e-107   NTclustered gi|725539117|gb|KM407590.1| 1574083 g8694 i0 87.395 25.93 357 35 89 8 1 356 348 1 Luticola muticopsis f. capitata isolate Ant003-G11 28S ribosomal RNA gene, partial sequence blastn 10372 401 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Diadesmidaceae Luticola Luticola muticopsis
1834234 1834234 PRJNA572587_P_NODE_22062_length_240_cov_19.832461_g21734_i0 PRJNA572587 22062 240 19.832461 47.5979064 Eucampia zodiacus 444606 SAR_Eukaryotes SAR_Eukaryotes 257 4.26e-64   NTclustered gi|1493678705|gb|MG821509.1| 444606 g21734 i0 92.778 66.325 180 9 75 4 26 205 533 708 Eucampia zodiacus isolate SKLMP_YG116 28S ribosomal RNA gene, partial sequence blastn 15918 257 1 Eukaryota Sar   Bacillariophyta Mediophyceae Hemiaulales Hemiaulaceae Eucampia Eucampia zodiacus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;