RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA572587 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7513812 7513812 PRJNA572587_P_NODE_24286_length_228_cov_8.564246_g23958_i0 PRJNA572587 24286 228 8.564246 19.52648088 Fimbriimonas 1005038 Bacteria Bacteria 187 5.339999999999998e-43   NTclustered gi|663071213|gb|CP007139.1| 661478 g23958 i0 83.5 9.53508771929824 200 33 88 0 2 201 29582 29781 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 2174 187 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
15861412 15861412 PRJNA572587_P_NODE_19093_length_260_cov_9.658768_g18765_i0 PRJNA572587 19093 260 9.658768 25.1127968 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 329 9.77e-86   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g18765 i0 91.667 181.973076923077 240 17 92 3 1 240 317090 316854 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 47313 329 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
18411048 18411048 PRJNA572587_P_NODE_5055_length_564_cov_12.097087_g4739_i0 PRJNA572587 5055 564 12.097087 68.22757068 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 267 1.82e-66   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g4739 i0 79.146 6.8794326241134804 398 74 70 7 21 413 1186594 1186201 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 3880 267 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
24785203 24785203 PRJNA572587_P_NODE_34760_length_187_cov_7.021739_g34432_i0 PRJNA572587 34760 187 7.021739 13.13065193 Armatimonadota bacterium 2033014 Bacteria Bacteria 52.8 0.016   NTclustered gi|2108374973|gb|CP070648.1| 2033014 g34432 i0 100 0.149732620320856 28 0 15 0 139 166 3308830 3308857 MAG: Armatimonadetes bacterium isolate bin88 chromosome blastn 28 52.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;