RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA572587 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6936972 6936972 PRJNA572587_P_NODE_25746_length_221_cov_1.186047_g25418_i0 PRJNA572587 25746 221 1.186047 2.62116387 uncultured Bryobacterales bacterium 2569091 Bacteria Bacteria 119 1.9e-22   NTclustered gi|2546137838|emb|OY282420.1| 2569091 g25418 i0 93.75 4.27601809954751 80 4 36 1 1 79 3758852 3758773 MAG: uncultured Bryobacterales bacterium isolate 78526416-339a-45b8-a6d3-8fabb82c2801 genome assembly, chromosome: 1 blastn 945 119 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     uncultured Bryobacterales bacterium
18410613 18410613 PRJNA572587_P_NODE_15095_length_296_cov_33.481781_g14767_i0 PRJNA572587 15095 296 33.481781 99.10607176 Acidobacteriota bacterium 1978231 Bacteria Bacteria 141 5.7e-29   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g14767 i0 83.648 0.631756756756757 159 16 52 8 61 213 3097227 3097073 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 187 141 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
24785310 24785310 PRJNA572587_P_NODE_46680_length_161_cov_4.517857_g46352_i0 PRJNA572587 46680 161 4.517857 7.27374977 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 257 2.64e-64   NTclustered gi|217038899|gb|EU810989.1| 171953 g46352 i0 97.351 227.111801242236 151 4 94 0 2 152 331 181 Uncultured Acidobacteria bacterium clone 01QD9 23S ribosomal RNA gene, partial sequence blastn 36565 257 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;