RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA572587 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9487087 9487087 PRJNA572587_P_NODE_15408_length_293_cov_8.381148_g15080_i0 PRJNA572587 15408 293 8.381148 24.55676364 Methanosarcina lacustris 170861 Archaea Archaea 261 4.15e-65   NTclustered gi|805377189|gb|CP009515.1| 1434111 g15080 i0 84.528 22.037542662116 265 39 90 2 5 268 2715806 2716069 Methanosarcina lacustris Z-7289, complete genome blastn 6457 261 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina lacustris
13890090 13890090 PRJNA572587_P_NODE_8031_length_428_cov_2.018470_g7706_i0 PRJNA572587 8031 428 2.01847 8.6390516 root 1 Root_unresolved Root_unresolved 91.6 8.75e-14   NTclustered gi|103488699|gb|DQ516752.1| 2190 g7706 i0 98.077 0.364485981308411 52 1 12 0 1 52 228 177 Methanocaldococcus jannaschii spike-in control MJ-500-35 genomic sequence blastn 156 91.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
23511365 23511365 PRJNA572587_P_NODE_33699_length_190_cov_24.226950_g33371_i0 PRJNA572587 33699 190 24.22695 46.031205 Methanosarcina barkeri 2208 Archaea Archaea 237 4.2e-58   NTclustered gi|805384997|gb|CP009517.1| 1434107 g33371 i0 92.216 2.58421052631579 167 13 88 0 24 190 4149228 4149394 Methanosarcina barkeri 3, complete genome blastn 491 237 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;