RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA572587" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA572587 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22235812 22235812 PRJNA572587_P_NODE_18558_length_264_cov_6.958140_g18230_i0 PRJNA572587 18558 264 6.95814 18.3694896 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 228 3.729999999999999e-55   NTclustered gi|551613833|ref|XM_005787831.1| 280463 g18230 i0 89.503 12.2727272727273 181 17 68 2 24 203 1240 1419 Emiliania huxleyi CCMP1516 putative EF-1 alpha/Tu like protein (EFG1), mRNA blastn 3240 228 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
24785287 24785287 PRJNA572587_P_NODE_4340_length_616_cov_3.446208_g4037_i0 PRJNA572587 4340 616 3.446208 21.22864128 Isochrysis galbana 37099 Haptophyta other_Eukaryota 171 1.62e-37   NTclustered gi|58613476|gb|AY826864.1| 37099 g4037 i0 78.824 21.0292207792208 255 52 41 2 339 592 1293 1040 Isochrysis galbana clone ISPGK1 phosphoglycerate kinase mRNA, complete cds blastn 12954 171 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Isochrysis Isochrysis galbana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;