RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA565778" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA565778 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9486586 9486586 PRJNA565778_S_NODE_21908_length_236_cov_348.442211_g21612_i0 PRJNA565778 21908 236 348.442211 822.32361796 Lobosea sp. I4_6E 507768 Tubulinea other_Eukaryota 180 9.31e-41   NTclustered gi|169264622|dbj|AB425946.1| 507768 g21612 i0 85.556 10.5889830508475 180 16 75 6 38 213 759 932 Lobosea sp. I4_6E gene for 18S ribosomal RNA, partial sequence blastn 2499 180 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. I4_6E
12037293 12037293 PRJNA565778_S_NODE_24170_length_224_cov_365.347594_g23874_i0 PRJNA565778 24170 224 365.347594 818.37861056 uncultured Arcellinida 765890 Tubulinea other_Eukaryota 106 1.51e-18   NTclustered gi|2330734148|gb|ON651577.1| 765890 g23874 i0 78.698 38.7410714285714 169 29 74 6 23 188 26 190 Uncultured Arcellinida isolate RA71_2 cytochrome oxidase subunit 1 (COI) gene, partial sequence; mitochondrial blastn 8678 106 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida     uncultured Arcellinida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;