RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA565778" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565778 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4385605 4385605 PRJNA565778_S_NODE_15564_length_280_cov_4.777778_g15268_i0 PRJNA565778 15564 280 4.777778 13.3777784 Isosphaeraceae bacterium EP7 3139350 Bacteria Bacteria 195 4.05e-45   NTclustered gi|2719878338|gb|CP151667.1| 3139350 g15268 i0 95.122 40.2142857142857 123 6 44 0 33 155 4040193 4040315 Isosphaeraceae bacterium EP7 chromosome, complete genome blastn 11260 195 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium EP7
9486574 9486574 PRJNA565778_S_NODE_21128_length_240_cov_636.866995_g20832_i0 PRJNA565778 21128 240 636.866995 1528.480788 Pirellulales bacterium 2715253 Bacteria Bacteria 193 1.22e-44   NTclustered gi|2874253964|emb|OY970289.1| 2715253 g20832 i0 83.981 6.55416666666667 206 28 85 4 2 204 313048 312845 MAG: Pirellulales bacterium isolate MFD05442.bin.c.2 genome assembly, chromosome: 1 blastn 1573 193 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium
14586938 14586938 PRJNA565778_S_NODE_16192_length_274_cov_388.755274_g15896_i0 PRJNA565778 16192 274 388.755274 1065.18945076 Frigoriglobus tundricola 2774151 Bacteria Bacteria 285 2.28e-72   NTclustered gi|1870286614|gb|CP053452.2| 2774151 g15896 i0 90.654 324.667883211679 214 20 78 0 22 235 4958815 4958602 Frigoriglobus tundricola strain PL17 chromosome, complete genome blastn 88959 285 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Frigoriglobus Frigoriglobus tundricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;