RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA565778" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA565778 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
558325 558325 PRJNA565778_S_NODE_29941_length_201_cov_1.920732_g29645_i0 PRJNA565778 29941 201 1.920732 3.86067132 Protostelium mycophagum 472931 Evosea other_Eukaryota 372 1.18e-98   NTclustered gi|290886111|gb|GU477647.1| 472931 g29645 i0 100 99.4577114427861 201 0 100 0 1 201 169 369 Protostelium mycophagum strain ATCC PRA-128 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence blastn 19991 372 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
1833748 1833748 PRJNA565778_S_NODE_30202_length_200_cov_2.398773_g29906_i0 PRJNA565778 30202 200 2.398773 4.797546 Protostelium mycophagum 472931 Evosea other_Eukaryota 324 3.33e-84   NTclustered gi|262262917|gb|FJ766460.1| 472931 g29906 i0 98.895 32.385 181 2 91 0 1 181 1432 1252 Protostelium mycophagum strain PRA-128 small subunit ribosomal RNA gene, partial sequence blastn 6477 324 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
20960292 20960292 PRJNA565778_S_NODE_16137_length_275_cov_5.563025_g15841_i0 PRJNA565778 16137 275 5.563025 15.29831875 Protostelium mycophagum 472931 Evosea other_Eukaryota 503 5.809999999999998e-138   NTclustered gi|262262917|gb|FJ766460.1| 472931 g15841 i0 99.636 39.2836363636364 275 1 100 0 1 275 319 45 Protostelium mycophagum strain PRA-128 small subunit ribosomal RNA gene, partial sequence blastn 10803 503 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
23510500 23510500 PRJNA565778_S_NODE_14779_length_287_cov_1.988000_g14483_i0 PRJNA565778 14779 287 1.988 5.70556 Acytostelium subglobosum 361139 Evosea other_Eukaryota 178 4.2e-40   NTclustered gi|831786240|ref|XM_012902590.1| 1410327 g14483 i0 79.918 8.42160278745645 244 47 85 2 44 286 1144 1386 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 2417 178 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;