RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA565778" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA565778 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10762673 10762673 PRJNA565778_S_NODE_33949_length_187_cov_9.000000_g33653_i0 PRJNA565778 33949 187 9 16.83 Philasterides dicentrarchi 282688 SAR_Eukaryotes SAR_Eukaryotes 235 1.4799999999999998e-57   NTclustered gi|49616744|gb|AY643504.1| 282688 g33653 i0 90.857 93.7700534759358 175 16 94 0 1 175 301 127 Philasterides dicentrarchi 26S ribosomal RNA gene, partial sequence blastn 17535 235 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philasterides Philasterides dicentrarchi
10762777 10762777 PRJNA565778_S_NODE_43029_length_150_cov_3.840708_g42733_i0 PRJNA565778 43029 150 3.840708 5.761062 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 268 1.11e-67   NTclustered gi|194245783|gb|EU828456.1| 5888 g42733 i0 98.684 95.2466666666667 152 0 100 1 1 150 3164 3013 Paramecium tetraurelia large subunit ribosomal RNA gene, complete sequence blastn 14287 268 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;