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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA565778" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 18 ✖

bioproject 1

  • PRJNA565778 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
558423 558423 PRJNA565778_S_NODE_3781_length_520_cov_265.521739_g3577_i0 PRJNA565778 3781 520 265.521739 1380.7130428 Potexvirus pepini 3433856 Viruses Viruses 876 0   NTclustered gi|2675378618|gb|PP116314.1| 112229 g3577 i0 99.38 87.7403846153846 484 2 93 1 38 520 5898 6381 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 45625 876 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
3108972 3108972 PRJNA565778_S_NODE_13183_length_302_cov_441.962264_g12887_i0 PRJNA565778 13183 302 441.962264 1334.72603728 Tobamovirus tabaci 3432891 Viruses Viruses 473 5.059999999999999e-129   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g12887 i0 98.868 87.7748344370861 265 3 88 0 1 265 2571 2307 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 26508 473 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
3108988 3108988 PRJNA565778_S_NODE_1403_length_751_cov_11.747899_g1303_i0 PRJNA565778 1403 751 11.747899 88.22672149 Tobamovirus tabaci 3432891 Viruses Viruses 1306 0   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g1303 i0 99.444 95.7470039946738 719 4 96 0 1 719 5614 4896 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 71906 1306 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
4385857 4385857 PRJNA565778_S_NODE_33844_length_187_cov_194.833333_g33548_i0 PRJNA565778 33844 187 194.833333 364.33833271 Tobamovirus tabaci 3432891 Viruses Viruses 268 1.46e-67   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g33548 i0 99.329 79.6844919786096 149 0 79 1 38 185 3672 3820 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 14901 268 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
6936357 6936357 PRJNA565778_S_NODE_25066_length_220_cov_162.054645_g24770_i0 PRJNA565778 25066 220 162.054645 356.520219 Unuamitovirus alar1 2956583 Viruses Viruses 333 6.209999999999999e-87   NTclustered gi|1050767093|dbj|LC145036.1| 1826822 g24770 i0 99.454 5.98636363636364 183 1 83 0 38 220 1 183 Alternaria arborescens mitovirus 1 genomic RNA, complete genome blastn 1317 333 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Unuamitovirus Unuamitovirus alar1
6936540 6936540 PRJNA565778_S_NODE_4186_length_498_cov_78.646421_g3971_i0 PRJNA565778 4186 498 78.646421 391.65917658 Botourmiaviridae sp. 2808997 Viruses Viruses 381 5.459999999999999e-101   NTclustered gi|2320142628|gb|ON585088.1| 2808997 g3971 i0 82.112 0.931726907630522 464 66 91 16 6 460 2541 2086 MAG: Botourmiaviridae sp. isolate PMS2_Contig239 RNA-dependent RNA polymerase gene, complete cds blastn 464 381 1 Viruses   Orthornavirae Lenarviricota Miaviricetes Ourlivirales Botourmiaviridae   Botourmiaviridae sp.
9486900 9486900 PRJNA565778_S_NODE_788_length_915_cov_5.216401_g722_i0 PRJNA565778 788 915 5.216401 47.73006915 Botourmiaviridae sp. 2808997 Viruses Viruses 1561 0   NTclustered gi|2320142606|gb|ON585076.1| 2808997 g722 i0 98.747 2.24262295081967 878 11 96 0 33 910 1477 2354 MAG: Botourmiaviridae sp. isolate PMS1_DN1240 RNA-dependent RNA polymerase gene, complete cds blastn 2052 1561 1 Viruses   Orthornavirae Lenarviricota Miaviricetes Ourlivirales Botourmiaviridae   Botourmiaviridae sp.
10762603 10762603 PRJNA565778_S_NODE_27789_length_209_cov_22.401163_g27493_i0 PRJNA565778 27789 209 22.401163 46.81843067 Rotavirus alphagastroenteritidis 3432193 Viruses Viruses 56.5 0.001   NTclustered gi|2314496612|gb|ON791960.1| 28875 g27493 i0 100 14.0382775119617 30 0 14 0 143 172 1010 1039 Rotavirus A strain RVA/Human-wt/MWI/CHX11U/2019/G3P[8] NSP3 gene, complete cds blastn 2934 56.5 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus alphagastroenteritidis
10762756 10762756 PRJNA565778_S_NODE_4089_length_503_cov_73.881974_g3875_i0 PRJNA565778 4089 503 73.881974 371.62632922 Tobamovirus tabaci 3432891 Viruses Viruses 846 0   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g3875 i0 99.57 92.4453280318091 465 1 92 1 3 466 3820 3356 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 46500 846 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
12037131 12037131 PRJNA565778_S_NODE_11550_length_321_cov_258.095070_g11254_i0 PRJNA565778 11550 321 258.09507 828.4851747 Tobamovirus tabaci 3432891 Viruses Viruses 512 1.1499999999999998e-140   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g11254 i0 99.643 86.8847352024922 280 1 87 0 5 284 5967 5688 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 27890 512 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
13312201 13312201 PRJNA565778_S_NODE_22551_length_233_cov_6.224490_g22255_i0 PRJNA565778 22551 233 6.22449 14.5030617 Potexvirus pepini 3433856 Viruses Viruses 431 2.2899999999999996e-116   NTclustered gi|57282636|emb|AJ606361.1| 112229 g22255 i0 100 81.4892703862661 233 0 100 0 1 233 6185 6417 Pepino mosaic virus complete genome, isolate LP-2001 blastn 18987 431 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
17136152 17136152 PRJNA565778_S_NODE_6814_length_407_cov_88.662162_g722_i1 PRJNA565778 6814 407 88.662162 360.85499934 Botourmiaviridae sp. 2808997 Viruses Viruses 649 0   NTclustered gi|2320142606|gb|ON585076.1| 2808997 g722 i1 98.634 2.03439803439803 366 5 90 0 6 371 2354 1989 MAG: Botourmiaviridae sp. isolate PMS1_DN1240 RNA-dependent RNA polymerase gene, complete cds blastn 828 649 1 Viruses   Orthornavirae Lenarviricota Miaviricetes Ourlivirales Botourmiaviridae   Botourmiaviridae sp.
17136184 17136184 PRJNA565778_S_NODE_8674_length_366_cov_4.601824_g8378_i0 PRJNA565778 8674 366 4.601824 16.84267584 Potexvirus pepini 3433856 Viruses Viruses 625 1.6299999999999995e-174   NTclustered gi|251821320|emb|FN429033.1| 112229 g8378 i0 100 92.3415300546448 338 0 92 0 29 366 239 576 Pepino mosaic virus partial CP gene for coat protein, strain PV-0554, genomic RNA blastn 33797 625 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
18987067 18987067 PRJNA565778_S_NODE_17375_length_265_cov_4.644737_g17079_i0 PRJNA565778 17375 265 4.644737 12.30855305 Botourmiaviridae 2560063 Viruses Viruses 84.2 8.59e-12   NTclustered gi|2500381378|ref|NC_076801.1| 2686545 g17079 i0 100 4.93584905660377 45 0 17 0 4 48 2330 2286 Plasmopara viticola lesion associated ourmia-like virus 72 isolate DMG-F_43929 RNA dependent RNA polymerase (QKR77_gp1) gene, complete cds blastn 1308 84.2 1 Viruses   Orthornavirae Lenarviricota Miaviricetes Ourlivirales Botourmiaviridae Scleroulivirus Scleroulivirus lambdaplasmoparae
19684700 19684700 PRJNA565778_S_NODE_24636_length_222_cov_73.935135_g24340_i0 PRJNA565778 24636 222 73.935135 164.1359997 Skokie dicistro-like virus 2789443 Viruses Viruses 167 6.739999999999999e-37   NTclustered gi|1935607033|gb|MT747992.1| 2789443 g24340 i0 85.535 0.716216216216216 159 23 72 0 37 195 3131 3289 Skokie dicistro-like virus strain USAdf-2 polyprotein 1 and polyprotein 2 genes, complete cds blastn 159 167 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
20960248 20960248 PRJNA565778_S_NODE_12697_length_308_cov_45.535055_g12401_i0 PRJNA565778 12697 308 45.535055 140.2479694 Tobamovirus tabaci 3432891 Viruses Viruses 472 1.86e-128   NTclustered gi|2217162015|gb|OL584366.1| 12242 g12401 i0 98.864 85.7077922077922 264 3 86 0 37 300 1440 1703 Tobacco mosaic virus isolate DSMZ PV-1199 genomic sequence blastn 26398 472 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
20960291 20960291 PRJNA565778_S_NODE_16097_length_275_cov_103.189076_g15801_i0 PRJNA565778 16097 275 103.189076 283.769959 Nepovirus avii 3047741 Viruses Viruses 403 6.06e-108   NTclustered gi|498716|emb|Z34265.1| 12615 g15801 i0 98.268 80.2472727272727 231 3 84 1 9 238 1588 1358 Cherry leaf roll virus (walnut) genomic RNA (1588bp) blastn 22068 403 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus avii
20960394 20960394 PRJNA565778_S_NODE_23477_length_228_cov_7.607330_g23181_i0 PRJNA565778 23477 228 7.60733 17.3447124 Bromovirus BMV 3427622 Viruses Viruses 344 2.99e-90   NTclustered gi|2214792991|gb|MW581063.1| 12302 g23181 i0 98.469 28.3684210526316 196 2 86 1 1 195 1189 994 Brome mosaic virus isolate BMV-R movement protein and coat protein genes, complete cds blastn 6468 344 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;