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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA565778" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA565778 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1833616 1833616 PRJNA565778_S_NODE_19342_length_252_cov_4.851163_g19046_i0 PRJNA565778 19342 252 4.851163 12.22493076 Watanabea sichuanensis 2704660 Plants Plants 435 1.94e-117   NTclustered gi|1802907773|gb|MT006194.1| 2704660 g19046 i0 97.647 101.25 255 3 100 1 1 252 2492 2746 Watanabea sichuanensis strain FACHB-1794 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25515 435 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Watanabea Watanabea sichuanensis
1833857 1833857 PRJNA565778_S_NODE_42922_length_151_cov_1.666667_g42626_i0 PRJNA565778 42922 151 1.666667 2.51666717 Volvox carteri 3067 Plants Plants 56.5 0.001   NTclustered gi|302854755|ref|XM_002958837.1| 3068 g42626 i0 96.97 0.218543046357616 33 1 22 0 117 149 1392 1360 Volvox carteri f. nagariensis eukaryotic initiation factor (VOLCADRAFT_78152), mRNA blastn 33 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
5661988 5661988 PRJNA565778_S_NODE_23425_length_228_cov_122.005236_g23129_i0 PRJNA565778 23425 228 122.005236 278.17193808 Haematococcus lacustris 44745 Plants Plants 342 1.08e-89   NTclustered gi|2201040776|gb|MN709220.1| 44745 g23129 i0 100 111.478070175439 185 0 81 0 38 222 9499 9315 Haematococcus lacustris strain FACHB-712 chloroplast, complete genome blastn 25417 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
6936472 6936472 PRJNA565778_S_NODE_34506_length_185_cov_268.601351_g34210_i0 PRJNA565778 34506 185 268.601351 496.91249935 uncultured Chloroidium 1267198 Plants Plants 198 1.92e-46   NTclustered gi|2515376695|gb|OR101552.1| 1267198 g34210 i0 90.667 79.827027027027 150 13 81 1 37 185 1166 1315 Uncultured Chloroidium clone mgcl21_AM06 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14768 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales     uncultured Chloroidium
7513706 7513706 PRJNA565778_S_NODE_42526_length_152_cov_7.460870_g42230_i0 PRJNA565778 42526 152 7.46087 11.3405224 Desmochloris 138596 Plants Plants 161 1.98e-35   NTclustered gi|371782086|emb|HE610118.1| 138176 g42230 i0 94.34 9.89473684210526 106 4 69 2 48 152 863 759 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 1504 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
10762755 10762755 PRJNA565778_S_NODE_40849_length_160_cov_4.130081_g40553_i0 PRJNA565778 40849 160 4.130081 6.6081296 Haematococcus lacustris 44745 Plants Plants 279 5.59e-71   NTclustered gi|2201040776|gb|MN709220.1| 44745 g40553 i0 100 122.925 151 0 94 0 10 160 11435 11285 Haematococcus lacustris strain FACHB-712 chloroplast, complete genome blastn 19668 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
12037276 12037276 PRJNA565778_S_NODE_22270_length_234_cov_237.152284_g21974_i0 PRJNA565778 22270 234 237.152284 554.93634456 Trebouxia sp. OTU A04 1660963 Plants Plants 62.1 3.48e-5   NTclustered gi|847145979|gb|KR914388.1| 1660963 g21974 i0 90 1.79059829059829 50 1 21 4 73 122 331 376 Trebouxia sp. OTU A04 voucher DNA ID 499 (F) PsbL (psbL) gene, partial cds; and psbL-psbJ intergenic spacer, partial sequence; chloroplast blastn 419 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. OTU A04
16438435 16438435 PRJNA565778_S_NODE_30113_length_200_cov_7.546012_g29817_i0 PRJNA565778 30113 200 7.546012 15.092024 Chlorophyta 3041 Plants Plants 320 4.31e-83   NTclustered gi|344221875|gb|HQ702325.1| 3077 g29817 i0 99.432 88 176 1 88 0 25 200 1565 1740 Chlorella vulgaris strain KMMCC FC-41 18S ribosomal RNA gene, partial sequence blastn 17600 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
20262298 20262298 PRJNA565778_S_NODE_31796_length_194_cov_8.668790_g31500_i0 PRJNA565778 31796 194 8.66879 16.8174526 Chlamydomonas 3052 Plants Plants 195 2.6299999999999997e-45   NTclustered gi|2243438197|emb|LR798803.1| 327070 g31500 i0 85.354 101.969072164948 198 18 100 8 1 194 6294 6104 Chlamydomonas sp. CCMP235 partial 45s rRNA cluster gene for 45s rRNA cluster blastn 19782 195 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. CCMP235
23510690 23510690 PRJNA565778_S_NODE_2819_length_582_cov_75.053211_g2651_i0 PRJNA565778 2819 582 75.053211 436.80968802 Trebouxia sp. SL0000003 3350044 Plants Plants 121 1.55e-22   NTclustered gi|2917929626|emb|OZ234914.1| 3350044 g2651 i0 77.178 1.02061855670103 241 33 56 14 44 279 1017657 1017880 Trebouxia sp. SL0000003 genome assembly, chromosome: 9 blastn 594 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
23510838 23510838 PRJNA565778_S_NODE_5299_length_452_cov_57.103614_g5049_i0 PRJNA565778 5299 452 57.103614 258.10833528 Monoraphidium neglectum 145388 Plants Plants 422 2.8999999999999995e-113   NTclustered gi|926786575|ref|XM_014046308.1| 145388 g5049 i0 86.822 20.4336283185841 387 40 84 8 38 417 840 1222 Monoraphidium neglectum elongation factor EF-1 alpha subunit mRNA blastn 9236 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;