contig_metadata
15 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1831026 | 1831026 | PRJNA565584_P_NODE_166702_length_251_cov_1.696629_g165550_i0 | PRJNA565584 | 166702 | 251 | 1.696629 | 4.25853879 | Opitutaceae bacterium TAV5 | 794903 | Bacteria | Bacteria | 171 | 6.02e-38 | NTclustered | gi|573471959|gb|CP007053.1| | 794903 | g165550 | i0 | 79.518 | 40.0398406374502 | 249 | 44 | 98 | 5 | 1 | 247 | 4267277 | 4267034 | Opitutaceae bacterium TAV5, complete genome | blastn | 10050 | 171 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutaceae bacterium TAV5 | ||
| 3105769 | 3105769 | PRJNA565584_P_NODE_134243_length_272_cov_3.623116_g133091_i0 | PRJNA565584 | 134243 | 272 | 3.623116 | 9.85487552 | Lacunisphaera limnophila | 1838286 | Bacteria | Bacteria | 326 | 1.33e-84 | NTclustered | gi|1070531674|gb|CP016094.1| | 1838286 | g133091 | i0 | 88.235 | 1 | 272 | 32 | 100 | 0 | 1 | 272 | 2168424 | 2168695 | Lacunisphaera limnophila strain IG16b, complete genome | blastn | 272 | 326 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Lacunisphaera | Lacunisphaera limnophila | |
| 3105965 | 3105965 | PRJNA565584_P_NODE_144103_length_266_cov_1.580311_g142951_i0 | PRJNA565584 | 144103 | 266 | 1.580311 | 4.20362726 | Congregicoccus parvus | 3081749 | Bacteria | Bacteria | 52.8 | 0.024 | NTclustered | gi|2599616993|dbj|AP028972.1| | 3081749 | g142951 | i0 | 100 | 0.105263157894737 | 28 | 0 | 11 | 0 | 37 | 64 | 2196547 | 2196574 | Opitutales bacterium ASA1 DNA, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Alterococcaceae | Congregicoccus | Congregicoccus parvus | |
| 3106321 | 3106321 | PRJNA565584_P_NODE_161583_length_254_cov_2.618785_g160431_i0 | PRJNA565584 | 161583 | 254 | 2.618785 | 6.6517139 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 276 | 1.26e-69 | NTclustered | gi|2874253690|emb|OY969416.1| | 412056 | g160431 | i0 | 86.434 | 65.3818897637795 | 258 | 28 | 100 | 7 | 1 | 254 | 1315976 | 1316230 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 | blastn | 16607 | 276 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 6933015 | 6933015 | PRJNA565584_P_NODE_136046_length_271_cov_2.101010_g134894_i0 | PRJNA565584 | 136046 | 271 | 2.10101 | 5.6937371 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 156 | 1.84e-33 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g134894 | i0 | 79.556 | 0.830258302583026 | 225 | 40 | 82 | 4 | 6 | 227 | 86829 | 86608 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 225 | 156 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 8207866 | 8207866 | PRJNA565584_P_NODE_134707_length_272_cov_1.899497_g133555_i0 | PRJNA565584 | 134707 | 272 | 1.899497 | 5.16663184 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 54.7 | 0.007 | NTclustered | gi|2874254065|emb|OY970130.1| | 412056 | g133555 | i0 | 100 | 0.106617647058824 | 29 | 0 | 11 | 0 | 114 | 142 | 1477774 | 1477746 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 | blastn | 29 | 54.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 9482909 | 9482909 | PRJNA565584_P_NODE_114928_length_285_cov_1.429245_g113776_i0 | PRJNA565584 | 114928 | 285 | 1.429245 | 4.07334825 | Opitutus terrae | 107709 | Bacteria | Bacteria | 171 | 6.97e-38 | NTclustered | gi|177839040|gb|CP001032.1| | 452637 | g113776 | i0 | 77.855 | 22.9228070175439 | 289 | 54 | 99 | 10 | 2 | 285 | 4865785 | 4865502 | Opitutus terrae PB90-1, complete genome | blastn | 6533 | 171 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus terrae | |
| 13308362 | 13308362 | PRJNA565584_P_NODE_103451_length_293_cov_3.354545_g102299_i0 | PRJNA565584 | 103451 | 293 | 3.354545 | 9.82881685 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 117 | 9.5e-22 | NTclustered | gi|2874254065|emb|OY970130.1| | 412056 | g102299 | i0 | 83.465 | 0.433447098976109 | 127 | 19 | 43 | 2 | 144 | 269 | 3824453 | 3824328 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 | blastn | 127 | 117 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 13888918 | 13888918 | PRJNA565584_P_NODE_38891_length_482_cov_1.388753_g37740_i0 | PRJNA565584 | 38891 | 482 | 1.388753 | 6.69378946 | PVC group | 1783257 | Bacteria | Bacteria | 54.7 | 0.013 | NTclustered | gi|293612874|gb|CP001998.1| | 583355 | g37740 | i0 | 100 | 1.8298755186722 | 29 | 0 | 6 | 0 | 249 | 277 | 1000367 | 1000395 | Coraliomargarita akajimensis DSM 45221, complete genome | blastn | 882 | 54.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Puniceicoccales | Coraliomargaritaceae | Coraliomargarita | Coraliomargarita akajimensis | |
| 14583222 | 14583222 | PRJNA565584_P_NODE_106572_length_290_cov_1.774194_g105420_i0 | PRJNA565584 | 106572 | 290 | 1.774194 | 5.1451626 | Nibricoccus sp. IMCC34717 | 3034021 | Bacteria | Bacteria | 52.8 | 0.027 | NTclustered | gi|2850969968|gb|CP119759.1| | 3034021 | g105420 | i0 | 100 | 0.096551724137931 | 28 | 0 | 10 | 0 | 214 | 241 | 2049803 | 2049830 | Nibricoccus sp. IMCC34717 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Nibricoccus | Nibricoccus sp. IMCC34717 | |
| 15857895 | 15857895 | PRJNA565584_P_NODE_149773_length_262_cov_2.026455_g148621_i0 | PRJNA565584 | 149773 | 262 | 2.026455 | 5.3093121 | Prosthecobacter debontii | 48467 | Bacteria | Bacteria | 315 | 2.76e-81 | NTclustered | gi|158934479|emb|AM041149.3| | 48467 | g148621 | i0 | 88.462 | 79.1946564885496 | 260 | 30 | 99 | 0 | 1 | 260 | 1784 | 1525 | Prosthecobacter debontii partial ppdk gene, bacterial tubulin operon 1 and partial cog2133 gene | blastn | 20749 | 315 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter debontii | |
| 19682409 | 19682409 | PRJNA565584_P_NODE_193016_length_246_cov_0.890173_g191864_i0 | PRJNA565584 | 193016 | 246 | 0.890173 | 2.18982558 | Fontisphaera persica | 2974023 | Bacteria | Bacteria | 279 | 9.36e-71 | NTclustered | gi|2439237958|gb|CP116615.1| | 2974023 | g191864 | i0 | 89.286 | 203.069105691057 | 224 | 22 | 91 | 2 | 23 | 246 | 3863878 | 3863657 | Fontisphaera persica strain B-154 chromosome, complete genome | blastn | 49955 | 279 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Limisphaerales | Fontisphaeraceae | Fontisphaera | Fontisphaera persica | |
| 19683571 | 19683571 | PRJNA565584_P_NODE_53256_length_407_cov_2.991018_g52105_i0 | PRJNA565584 | 53256 | 407 | 2.991018 | 12.17344326 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 739 | 0 | NTclustered | gi|2442650069|gb|OQ422736.1| | 156588 | g52105 | i0 | 99.507 | 96.8009828009828 | 406 | 2 | 99 | 0 | 2 | 407 | 930 | 525 | Uncultured Verrucomicrobia bacterium clone KCM_4_1_112 16S ribosomal RNA gene, partial sequence | blastn | 39398 | 739 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 22232179 | 22232179 | PRJNA565584_P_NODE_142638_length_267_cov_1.515464_g141486_i0 | PRJNA565584 | 142638 | 267 | 1.515464 | 4.04628888 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 111 | 3.97e-20 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g141486 | i0 | 93.333 | 0.280898876404494 | 75 | 5 | 28 | 0 | 3 | 77 | 574165 | 574239 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 75 | 111 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 24781355 | 24781355 | PRJNA565584_P_NODE_145920_length_265_cov_1.296875_g144768_i0 | PRJNA565584 | 145920 | 265 | 1.296875 | 3.43671875 | Luteolibacter ambystomatis | 2824561 | Bacteria | Bacteria | 215 | 2.92e-51 | NTclustered | gi|2029343589|gb|CP073100.1| | 2824561 | g144768 | i0 | 83.262 | 41.3358490566038 | 233 | 39 | 88 | 0 | 31 | 263 | 3626746 | 3626514 | Luteolibacter ambystomatis strain 32A chromosome, complete genome | blastn | 10954 | 215 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter ambystomatis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;