RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565584 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4382574 4382574 PRJNA565584_P_NODE_142764_length_267_cov_1.402062_g141612_i0 PRJNA565584 142764 267 1.402062 3.74350554 Geopsychrobacteraceae bacterium 3065857 Bacteria Bacteria 54.7 0.007   NTclustered gi|2621702214|emb|OY760196.1| 3065857 g141612 i0 100 0.325842696629214 29 0 11 0 162 190 3903456 3903484 MAG: Geopsychrobacteraceae bacterium isolate 3ac22823-4ae2-415b-96ed-595fc0828211 genome assembly, chromosome: 1 blastn 87 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae   Geopsychrobacteraceae bacterium
4382802 4382802 PRJNA565584_P_NODE_154504_length_259_cov_1.655914_g153352_i0 PRJNA565584 154504 259 1.655914 4.28881726 Desulfovibrio aminophilus 81425 Bacteria Bacteria 71.3 6.51e-8   NTclustered gi|2908463109|gb|CP168306.1| 81425 g153352 i0 88.136 0.683397683397683 59 7 23 0 51 109 1086776 1086718 MAG: Desulfovibrio aminophilus isolate Co chromosome, complete genome blastn 177 71.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio aminophilus
8208864 8208864 PRJNA565584_P_NODE_189227_length_246_cov_2.260116_g188075_i0 PRJNA565584 189227 246 2.260116 5.55988536 Geotalea daltonii 1203471 Bacteria Bacteria 63.9 1.03e-5   NTclustered gi|221562406|gb|CP001390.1| 316067 g188075 i0 100 1.29268292682927 34 0 14 0 139 172 1147909 1147942 Geobacter daltonii FRC-32, complete genome blastn 318 63.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea daltonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;