RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 6 ✖

bioproject 1

  • PRJNA565584 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
556373 556373 PRJNA565584_P_NODE_221461_length_228_cov_2.890323_g220309_i0 PRJNA565584 221461 228 2.890323 6.58993644 Chondrus crispus 2769 Rhodophyta other_Eukaryota 176 1.16e-39   NTclustered gi|546299754|ref|XM_005710854.1| 2769 g220309 i0 83.511 18.2675438596491 188 31 82 0 9 196 1042 1229 Chondrus crispus mitochondrial F-type ATPase F1 subunit beta, precursor (CHC_T00009073001) mRNA, complete cds blastn 4165 176 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
2410752 2410752 PRJNA565584_P_NODE_67142_length_362_cov_3.391003_g65991_i0 PRJNA565584 67142 362 3.391003 12.27543086 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 195 5.39e-45   NTclustered gi|52000406|dbj|AB091231.1| 2771 g65991 i0 84.848 53.1933701657459 198 24 54 6 1 195 1123 929 Cyanidium caldarium gene for 18S rRNA, partial sequence, strain: SAG16.91 blastn 19256 196 0.994897959183674 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidium Cyanidium caldarium
14586057 14586057 PRJNA565584_P_NODE_57572_length_391_cov_8.389937_g56421_i0 PRJNA565584 57572 391 8.389937 32.80465367 Symphyocladia marchantioides 88360 Rhodophyta other_Eukaryota 93.5 2.2e-14   NTclustered gi|2431519202|ref|NC_070152.1| 88360 g56421 i0 85.556 5.11253196930946 90 11 23 2 1 89 13542 13630 Symphyocladia marchantioides isolate PD3704 voucher PD3704 mitochondrion, complete genome blastn 1999 93.5 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Symphyocladia Symphyocladia marchantioides
19682384 19682384 PRJNA565584_P_NODE_191176_length_246_cov_0.890173_g190024_i0 PRJNA565584 191176 246 0.890173 2.18982558 Ceratodictyon intricatum 2725877 Rhodophyta other_Eukaryota 141 4.61e-29   NTclustered gi|116734096|gb|EF033575.1| 2725877 g190024 i0 84.138 18.020325203252 145 23 59 0 101 245 83 227 Ceratodictyon intricatum voucher GWS001072 elongation factor 2 (EF2) gene, partial cds blastn 4433 141 1 Eukaryota     Rhodophyta Florideophyceae Rhodymeniales Lomentariaceae Ceratodictyon Ceratodictyon intricatum
20958532 20958532 PRJNA565584_P_NODE_218137_length_236_cov_2.834356_g216985_i0 PRJNA565584 218137 236 2.834356 6.68908016 Pyropia seriata 79731 Rhodophyta other_Eukaryota 342 1.12e-89   NTclustered gi|922081034|gb|KP241942.1| 79731 g216985 i0 92.797 72.093220338983 236 17 100 0 1 236 1819 1584 Pyropia seriata heat shock protein 70c (HSP70c) mRNA, complete cds blastn 17014 342 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia seriata
23508213 23508213 PRJNA565584_P_NODE_185419_length_247_cov_1.505747_g184267_i0 PRJNA565584 185419 247 1.505747 3.71919509 Pyropia sp. 2 LEY-2017 2058400 Rhodophyta other_Eukaryota 357 4.22e-94   NTclustered gi|1297588698|gb|MG647763.1| 2058400 g184267 i0 92.278 87.246963562753 259 8 100 2 1 247 94 352 Pyropia sp. 2 LEY-2017 voucher LYCN151 small subunit ribosomal RNA gene, partial sequence blastn 21550 357 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia sp. 2 LEY-2017

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;